Variant report

Variant	rs1184089
Chromosome Location	chr10:61645590-61645591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61643704..61646293-chr10:61656724..61658823,2	MCF-7	breast:
2	chr10:61595408..61597026-chr10:61643896..61645826,2	MCF-7	breast:
3	chr10:61639233..61641192-chr10:61644964..61647007,2	MCF-7	breast:
4	chr10:61643762..61645786-chr10:61664123..61666003,2	MCF-7	breast:
5	chr10:61636740..61643413-chr10:61643807..61649213,6	K562	blood:
6	chr10:61641536..61643091-chr10:61645394..61647753,2	MCF-7	breast:
7	chr10:61638398..61641573-chr10:61642787..61646612,4	K562	blood:
8	chr10:61645006..61647125-chr10:61664294..61667425,3	K562	blood:
9	chr10:61645422..61647388-chr10:61657593..61660192,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10761422	0.88[CHB][hapmap]
rs1171810	0.97[ASN][1000 genomes]
rs1171813	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171815	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171816	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171817	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171818	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171819	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171820	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171824	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1171825	0.96[ASN][1000 genomes]
rs1171826	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1171828	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1171833	0.81[GIH][hapmap]
rs1180657	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1180658	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776262	0.94[CHB][hapmap]
rs1664257	0.89[GIH][hapmap]
rs1664258	0.89[GIH][hapmap]
rs1664260	0.86[GIH][hapmap]
rs1664262	0.89[GIH][hapmap]
rs1684895	0.88[CHB][hapmap]
rs1684898	0.89[GIH][hapmap]
rs1684900	0.86[GIH][hapmap]
rs2393573	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2440910	0.89[GIH][hapmap]
rs2450468	0.89[GIH][hapmap]
rs2456712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3099368	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723213	0.93[CHB][hapmap]
rs895243	0.89[GIH][hapmap]
rs9332447	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61630000-61647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:61633400-61647800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:61633400-61647800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:61633400-61647800	Weak transcription	Fetal Stomach	stomach
6	chr10:61633400-61648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:61634000-61645600	Weak transcription	Fetal Lung	lung
8	chr10:61634000-61646800	Weak transcription	Adipose Nuclei	Adipose
9	chr10:61634400-61648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:61634400-61649000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:61634400-61651200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:61635000-61646800	Weak transcription	Right Ventricle	heart
13	chr10:61635600-61647600	Weak transcription	Brain Anterior Caudate	brain
14	chr10:61635800-61648600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:61637400-61647800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:61637400-61648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:61637600-61653600	Weak transcription	NHDF-Ad	bronchial
18	chr10:61637800-61645800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:61637800-61648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:61637800-61649200	Weak transcription	HMEC	breast
21	chr10:61637800-61653600	Weak transcription	NH-A	brain
22	chr10:61638200-61646800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:61638400-61647000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:61638400-61653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:61638400-61653600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:61638400-61653600	Weak transcription	Osteobl	bone
27	chr10:61638600-61646800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:61638600-61647800	Weak transcription	Ovary	ovary
29	chr10:61638600-61653200	Weak transcription	HSMMtube	muscle
30	chr10:61639600-61648800	Weak transcription	Thymus	Thymus
31	chr10:61639800-61646600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:61640200-61645600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:61640200-61647800	Weak transcription	Aorta	Aorta
34	chr10:61640600-61648800	Weak transcription	HepG2	liver
35	chr10:61641000-61648000	Weak transcription	Gastric	stomach
36	chr10:61641000-61648200	Weak transcription	Fetal Intestine Large	intestine
37	chr10:61641200-61646000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:61641200-61647600	Weak transcription	NHEK	skin
39	chr10:61641200-61648000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:61641200-61648000	Weak transcription	Fetal Intestine Small	intestine
41	chr10:61641200-61653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:61641400-61652000	Weak transcription	Fetal Heart	heart
43	chr10:61641600-61648000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:61641600-61650800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:61641600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:61641600-61664200	Weak transcription	A549	lung
47	chr10:61641800-61646600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:61641800-61646800	Weak transcription	Pancreas	Pancrea
49	chr10:61641800-61655400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:61642200-61647800	Weak transcription	Lung	lung

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