Variant report

Variant	rs1171826
Chromosome Location	chr10:61663637-61663638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61628053..61630048-chr10:61661857..61663658,2	K562	blood:
2	chr10:61615112..61617171-chr10:61663279..61664781,2	MCF-7	breast:
3	chr10:61594610..61596651-chr10:61661878..61664205,2	K562	blood:
4	chr10:61603804..61606777-chr10:61661880..61663736,2	K562	blood:
5	chr10:61661963..61664576-chr10:61749051..61751954,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10761422	0.88[CHB][hapmap]
rs1171810	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1171813	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1171815	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1171816	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1171817	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1171818	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1171819	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1171820	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1171824	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1171825	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171828	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180657	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1180658	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1184089	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12776262	0.94[CHB][hapmap]
rs1684895	0.88[CHB][hapmap]
rs1684900	0.85[GIH][hapmap]
rs2393573	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2456712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3099368	0.96[ASN][1000 genomes]
rs723213	0.93[CHB][hapmap]
rs9332447	0.83[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
3	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:61653400-61663800	Enhancers	Fetal Intestine Large	intestine
7	chr10:61654800-61663800	Weak transcription	HSMM	muscle
8	chr10:61654800-61664000	Weak transcription	NHLF	lung
9	chr10:61655600-61663800	Weak transcription	Osteobl	bone
10	chr10:61656000-61663800	Weak transcription	NH-A	brain
11	chr10:61656200-61664000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:61656200-61664200	Weak transcription	Right Ventricle	heart
13	chr10:61657600-61663800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:61657600-61664200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:61658400-61664000	Weak transcription	Liver	Liver
16	chr10:61658400-61664000	Weak transcription	Right Atrium	heart
17	chr10:61658600-61664200	Weak transcription	Left Ventricle	heart
18	chr10:61658800-61664000	Weak transcription	Fetal Kidney	kidney
19	chr10:61659400-61664600	Weak transcription	HSMMtube	muscle
20	chr10:61659800-61663800	Weak transcription	Fetal Brain Male	brain
21	chr10:61659800-61664000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:61659800-61664000	Enhancers	HMEC	breast
23	chr10:61659800-61664000	Weak transcription	HUVEC	blood vessel
24	chr10:61660000-61663800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:61660400-61663800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:61660400-61664000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:61660400-61664000	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:61660400-61664000	Weak transcription	Fetal Stomach	stomach
29	chr10:61660400-61664200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:61660400-61664200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:61660600-61664200	Weak transcription	Spleen	Spleen
32	chr10:61660600-61664600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:61660800-61663800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:61660800-61664200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:61660800-61664200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:61660800-61664400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:61661000-61663800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:61661200-61665000	Enhancers	Small Intestine	intestine
39	chr10:61661400-61664000	Enhancers	HepG2	liver
40	chr10:61661600-61663800	Strong transcription	Fetal Thymus	thymus
41	chr10:61661600-61664200	Weak transcription	Gastric	stomach
42	chr10:61661800-61664000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr10:61662000-61663800	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:61662000-61663800	Weak transcription	Psoas Muscle	Psoas
45	chr10:61662000-61664000	Weak transcription	Colonic Mucosa	Colon
46	chr10:61662000-61664000	Weak transcription	Esophagus	oesophagus
47	chr10:61662000-61664200	Weak transcription	Pancreas	Pancrea
48	chr10:61662400-61664400	Weak transcription	Ovary	ovary
49	chr10:61662800-61663800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:61662800-61663800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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