Variant report

Variant	rs10761422
Chromosome Location	chr10:61727115-61727116
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61664106..61669849-chr10:61722794..61729304,18	MCF-7	breast:
2	chr10:61703565..61709814-chr10:61724833..61727412,7	MCF-7	breast:
3	chr10:61720365..61722012-chr10:61725075..61727213,2	K562	blood:
4	chr10:61666131..61667723-chr10:61726996..61729053,2	K562	blood:
5	chr10:61702957..61706196-chr10:61723593..61729124,6	MCF-7	breast:
6	chr10:61722294..61728024-chr10:61729019..61732637,6	K562	blood:
7	chr10:61707056..61709767-chr10:61725475..61727127,2	MCF-7	breast:
8	chr10:61725526..61727186-chr10:61748882..61750864,2	MCF-7	breast:
9	chr10:61664953..61667723-chr10:61725455..61729053,4	K562	blood:
10	chr10:61717909..61722906-chr10:61724345..61729038,7	MCF-7	breast:
11	chr10:61663484..61669507-chr10:61721042..61729860,16	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction
ENSG00000235931	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1171813	0.83[CHB][hapmap]
rs1171820	0.88[CHB][hapmap]
rs1171826	0.88[CHB][hapmap]
rs1180657	0.88[CHB][hapmap]
rs1184089	0.88[CHB][hapmap]
rs12776262	0.82[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1684895	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2456712	0.88[CHB][hapmap]
rs723213	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9332447	0.82[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.89[MEX][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10761422	ZWINT	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61719400-61730600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:61724400-61727200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:61724400-61727200	Enhancers	HMEC	breast
4	chr10:61724600-61727200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:61724600-61728200	Enhancers	Placenta	Placenta
6	chr10:61724800-61727200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:61725000-61727200	Enhancers	Hela-S3	cervix
8	chr10:61725200-61727200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:61725200-61727200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:61725200-61727200	Enhancers	K562	blood
11	chr10:61725200-61728200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr10:61725400-61727400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:61725600-61727400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:61725600-61730800	Weak transcription	A549	lung
15	chr10:61725800-61727200	Enhancers	NHEK	skin
16	chr10:61725800-61728000	Weak transcription	Pancreas	Pancrea
17	chr10:61725800-61728200	Weak transcription	Stomach Mucosa	stomach
18	chr10:61725800-61731400	Weak transcription	Fetal Intestine Small	intestine
19	chr10:61726400-61727200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:61726600-61727200	Enhancers	Fetal Intestine Large	intestine
21	chr10:61726800-61727200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr10:61726800-61727200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:61726800-61727200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:61726800-61727200	Enhancers	Esophagus	oesophagus
25	chr10:61726800-61727200	Enhancers	Gastric	stomach
26	chr10:61726800-61731000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:61727000-61728000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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