Variant report

Variant	rs1171813
Chromosome Location	chr10:61644968-61644969
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61643704..61646293-chr10:61656724..61658823,2	MCF-7	breast:
2	chr10:61595408..61597026-chr10:61643896..61645826,2	MCF-7	breast:
3	chr10:61639233..61641192-chr10:61644964..61647007,2	MCF-7	breast:
4	chr10:61643762..61645786-chr10:61664123..61666003,2	MCF-7	breast:
5	chr10:61636740..61643413-chr10:61643807..61649213,6	K562	blood:
6	chr10:61638398..61641573-chr10:61642787..61646612,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10761422	0.83[CHB][hapmap]
rs1171810	0.96[ASN][1000 genomes]
rs1171815	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171816	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171817	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171818	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171819	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171820	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171824	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1171825	0.94[ASN][1000 genomes]
rs1171826	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1171828	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1180657	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1180658	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1184089	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12776262	0.88[CHB][hapmap]
rs1684895	0.83[CHB][hapmap]
rs2393573	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2456712	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3099368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723213	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61630000-61647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:61633400-61645200	Weak transcription	Fetal Thymus	thymus
4	chr10:61633400-61647800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:61633400-61647800	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:61633400-61647800	Weak transcription	Fetal Stomach	stomach
7	chr10:61633400-61648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:61633600-61645200	Weak transcription	Brain Germinal Matrix	brain
9	chr10:61634000-61645000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:61634000-61645600	Weak transcription	Fetal Lung	lung
11	chr10:61634000-61646800	Weak transcription	Adipose Nuclei	Adipose
12	chr10:61634400-61648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:61634400-61649000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:61634400-61651200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:61634800-61645200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:61635000-61645400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:61635000-61646800	Weak transcription	Right Ventricle	heart
18	chr10:61635600-61647600	Weak transcription	Brain Anterior Caudate	brain
19	chr10:61635800-61648600	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:61637400-61645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:61637400-61647800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:61637400-61648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:61637600-61645200	Weak transcription	Right Atrium	heart
24	chr10:61637600-61653600	Weak transcription	NHDF-Ad	bronchial
25	chr10:61637800-61645800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:61637800-61648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:61637800-61649200	Weak transcription	HMEC	breast
28	chr10:61637800-61653600	Weak transcription	NH-A	brain
29	chr10:61638200-61646800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:61638400-61647000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:61638400-61653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:61638400-61653600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:61638400-61653600	Weak transcription	Osteobl	bone
34	chr10:61638600-61646800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:61638600-61647800	Weak transcription	Ovary	ovary
36	chr10:61638600-61653200	Weak transcription	HSMMtube	muscle
37	chr10:61639400-61645200	Weak transcription	Liver	Liver
38	chr10:61639600-61645000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:61639600-61648800	Weak transcription	Thymus	Thymus
40	chr10:61639800-61646600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:61640200-61645600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:61640200-61647800	Weak transcription	Aorta	Aorta
43	chr10:61640600-61648800	Weak transcription	HepG2	liver
44	chr10:61640800-61645000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:61641000-61645200	Weak transcription	Left Ventricle	heart
46	chr10:61641000-61648000	Weak transcription	Gastric	stomach
47	chr10:61641000-61648200	Weak transcription	Fetal Intestine Large	intestine
48	chr10:61641200-61645200	Weak transcription	Esophagus	oesophagus
49	chr10:61641200-61645400	Weak transcription	Psoas Muscle	Psoas
50	chr10:61641200-61645400	Weak transcription	Small Intestine	intestine

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