Variant report

Variant	rs2393573
Chromosome Location	chr10:61657500-61657501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61643704..61646293-chr10:61656724..61658823,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10994058	0.91[CHB][hapmap]
rs1171813	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1171815	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1171818	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1171819	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1171820	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1171824	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1171826	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1171828	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1184089	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1822913	0.82[CHB][hapmap]
rs2456712	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3099368	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61643000-61659400	Weak transcription	Hela-S3	cervix
3	chr10:61645800-61659400	Weak transcription	Fetal Brain Male	brain
4	chr10:61648600-61657600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
6	chr10:61650000-61659600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:61650000-61659800	Weak transcription	Thymus	Thymus
8	chr10:61650200-61658000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:61650200-61659400	Weak transcription	Fetal Thymus	thymus
10	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:61650400-61659600	Weak transcription	Dnd41	blood
13	chr10:61651200-61662000	Enhancers	Stomach Mucosa	stomach
14	chr10:61651200-61663400	Enhancers	Colon Smooth Muscle	Colon
15	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:61651600-61657800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:61651800-61662000	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:61652000-61659200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:61653200-61657600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:61653200-61658000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:61653200-61658200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:61653200-61658200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:61653400-61657600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:61653400-61660000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:61653400-61660600	Enhancers	Fetal Intestine Small	intestine
26	chr10:61653400-61661800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:61653400-61663800	Enhancers	Fetal Intestine Large	intestine
28	chr10:61653600-61659400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr10:61653800-61657600	Weak transcription	Spleen	Spleen
30	chr10:61653800-61659800	Enhancers	Fetal Heart	heart
31	chr10:61653800-61661800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr10:61654200-61658600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:61654200-61659000	Weak transcription	GM12878-XiMat	blood
34	chr10:61654200-61659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:61654200-61659600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:61654200-61663200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:61654400-61657600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:61654400-61658800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:61654400-61659200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:61654400-61659400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:61654400-61661400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:61654400-61663400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:61654800-61657600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:61654800-61658200	Weak transcription	Fetal Brain Female	brain
45	chr10:61654800-61659200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:61654800-61659200	Weak transcription	Aorta	Aorta
47	chr10:61654800-61659800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:61654800-61663400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:61654800-61663800	Weak transcription	HSMM	muscle
50	chr10:61654800-61664000	Weak transcription	NHLF	lung

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