Variant report

Variant	rs1171819
Chromosome Location	chr10:61647153-61647154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61646248..61649681-chr10:61659057..61661794,4	MCF-7	breast:
2	chr10:61645960..61647887-chr10:61649262..61651552,2	MCF-7	breast:
3	chr10:61646362..61648148-chr10:61665305..61667031,2	MCF-7	breast:
4	chr10:61636740..61643413-chr10:61643807..61649213,6	K562	blood:
5	chr10:61641536..61643091-chr10:61645394..61647753,2	MCF-7	breast:
6	chr10:61645422..61647388-chr10:61657593..61660192,2	K562	blood:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1171810	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1171813	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171816	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171817	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171824	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1171825	0.96[ASN][1000 genomes]
rs1171826	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1171828	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1180657	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1180658	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1184089	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393573	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2456712	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3099368	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61630000-61647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:61633400-61647800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:61633400-61647800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:61633400-61647800	Weak transcription	Fetal Stomach	stomach
6	chr10:61633400-61648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:61634400-61648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:61634400-61649000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:61634400-61651200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:61635600-61647600	Weak transcription	Brain Anterior Caudate	brain
11	chr10:61635800-61648600	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:61637400-61647800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:61637400-61648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:61637600-61653600	Weak transcription	NHDF-Ad	bronchial
15	chr10:61637800-61648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:61637800-61649200	Weak transcription	HMEC	breast
17	chr10:61637800-61653600	Weak transcription	NH-A	brain
18	chr10:61638400-61653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:61638400-61653600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:61638400-61653600	Weak transcription	Osteobl	bone
21	chr10:61638600-61647800	Weak transcription	Ovary	ovary
22	chr10:61638600-61653200	Weak transcription	HSMMtube	muscle
23	chr10:61639600-61648800	Weak transcription	Thymus	Thymus
24	chr10:61640200-61647800	Weak transcription	Aorta	Aorta
25	chr10:61640600-61648800	Weak transcription	HepG2	liver
26	chr10:61641000-61648000	Weak transcription	Gastric	stomach
27	chr10:61641000-61648200	Weak transcription	Fetal Intestine Large	intestine
28	chr10:61641200-61647600	Weak transcription	NHEK	skin
29	chr10:61641200-61648000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:61641200-61648000	Weak transcription	Fetal Intestine Small	intestine
31	chr10:61641200-61653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:61641400-61652000	Weak transcription	Fetal Heart	heart
33	chr10:61641600-61648000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:61641600-61650800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:61641600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:61641600-61664200	Weak transcription	A549	lung
37	chr10:61641800-61655400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:61642200-61647800	Weak transcription	Lung	lung
39	chr10:61643000-61659400	Weak transcription	Hela-S3	cervix
40	chr10:61644000-61648000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr10:61644000-61649600	Enhancers	Colon Smooth Muscle	Colon
42	chr10:61644600-61649400	Weak transcription	Brain Angular Gyrus	brain
43	chr10:61644600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:61644800-61647200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:61644800-61647600	Enhancers	Primary T cells from cord blood	blood
46	chr10:61644800-61648200	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr10:61644800-61648400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:61644800-61648600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr10:61644800-61649000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:61645000-61647200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links