Variant report

Variant	rs1171828
Chromosome Location	chr10:61664610-61664611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61643762..61645786-chr10:61664123..61666003,2	MCF-7	breast:
2	chr10:61593371..61594213-chr10:61664532..61665492,2	MCF-7	breast:
3	chr10:61664492..61665429-chr5:179247686..179248523,2	Hela-S3	cervix:
4	chr10:61615112..61617171-chr10:61663279..61664781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161011	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1171810	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1171813	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1171815	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1171816	0.91[ASN][1000 genomes]
rs1171817	0.91[ASN][1000 genomes]
rs1171818	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1171819	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1171820	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1171824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1171825	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1171826	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1180657	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1180658	0.91[ASN][1000 genomes]
rs1184089	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2393573	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2456712	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3099368	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61661200-61665000	Enhancers	Small Intestine	intestine
2	chr10:61663000-61664800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:61663400-61664800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:61663400-61664800	Transcr. at gene 5' and 3'	K562	blood
5	chr10:61663400-61665000	Flanking Active TSS	GM12878-XiMat	blood
6	chr10:61663400-61665200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:61663400-61665200	Flanking Active TSS	NHEK	skin
8	chr10:61663400-61665800	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr10:61663400-61665800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr10:61663400-61668400	Active TSS	Aorta	Aorta
11	chr10:61663600-61664800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:61663600-61664800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:61663600-61665000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr10:61663600-61665200	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr10:61663600-61665200	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr10:61663600-61665400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:61663800-61664800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:61663800-61664800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr10:61663800-61664800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr10:61663800-61664800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:61663800-61664800	Flanking Active TSS	NHDF-Ad	bronchial
22	chr10:61663800-61665000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:61663800-61665200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:61663800-61665200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:61663800-61665200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:61663800-61665200	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr10:61663800-61665200	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr10:61663800-61665200	Flanking Active TSS	Fetal Heart	heart
29	chr10:61663800-61665400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:61663800-61665600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:61663800-61665800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr10:61663800-61666800	Active TSS	Colon Smooth Muscle	Colon
33	chr10:61663800-61667000	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr10:61664000-61664800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:61664000-61664800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:61664000-61664800	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr10:61664000-61664800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr10:61664000-61664800	Flanking Active TSS	HMEC	breast
39	chr10:61664000-61665000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:61664000-61665000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr10:61664000-61665000	Flanking Active TSS	Fetal Kidney	kidney
42	chr10:61664000-61665000	Flanking Active TSS	Thymus	Thymus
43	chr10:61664000-61665000	Flanking Active TSS	HepG2	liver
44	chr10:61664000-61665200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:61664000-61665200	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr10:61664000-61665200	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr10:61664000-61665200	Flanking Active TSS	Fetal Lung	lung
48	chr10:61664000-61665200	Flanking Active TSS	Dnd41	blood
49	chr10:61664000-61665200	Flanking Active TSS	Hela-S3	cervix
50	chr10:61664000-61665200	Flanking Active TSS	NH-A	brain

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