Variant report

Variant	rs12776262
Chromosome Location	chr10:61719385-61719386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10761422	0.82[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1171813	0.88[CHB][hapmap]
rs1171820	0.94[CHB][hapmap]
rs1171826	0.94[CHB][hapmap]
rs1180657	0.94[CHB][hapmap]
rs1184089	0.94[CHB][hapmap]
rs12784462	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1684895	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2456712	0.94[CHB][hapmap]
rs723213	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9332447	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[MEX][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12776262	ZWINT	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61718000-61719600	Enhancers	Placenta	Placenta
2	chr10:61718000-61721000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr10:61718800-61719600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:61719000-61719400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:61719000-61719400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:61719200-61719800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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