Variant report

Variant	rs1664254
Chromosome Location	chr10:61630639-61630640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61628076..61632189-chr10:61632717..61638646,7	K562	blood:
2	chr10:61629487..61632652-chr10:61653201..61655969,3	K562	blood:
3	chr10:61630214..61632918-chr10:61637567..61639312,2	MCF-7	breast:
4	chr10:61611168..61612736-chr10:61629304..61631288,2	K562	blood:
5	chr10:61630078..61632932-chr10:61659731..61661689,2	MCF-7	breast:
6	chr10:61628363..61632189-chr10:61637394..61643761,6	K562	blood:
7	chr10:61628053..61631509-chr10:61662158..61666953,4	K562	blood:
8	chr10:61627957..61629887-chr10:61630516..61633245,2	MCF-7	breast:
9	chr10:61593326..61595203-chr10:61629041..61631124,2	K562	blood:
10	chr10:61628330..61633371-chr10:61664622..61667776,4	MCF-7	breast:
11	chr10:61628499..61631972-chr10:61632717..61636046,5	K562	blood:
12	chr10:61629487..61631429-chr10:61653201..61655597,2	K562	blood:
13	chr10:61623680..61630815-chr10:61664299..61668134,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10509114	0.82[EUR][1000 genomes]
rs1171787	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1171833	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12573055	0.81[CEU][hapmap]
rs12776024	0.84[CHB][hapmap]
rs1624715	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1627130	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1627152	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1628136	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664258	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664260	0.89[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664261	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664262	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664263	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1684898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684900	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs1684902	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1684903	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17202600	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1972950	0.85[CEU][hapmap]
rs2440906	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440908	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440909	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440910	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440911	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440918	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2450468	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450469	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2450471	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3763745	0.84[CEU][hapmap]
rs3793866	0.90[CEU][hapmap]
rs4146652	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs895243	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:61618000-61632600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:61618600-61633200	Weak transcription	HSMM	muscle
5	chr10:61624400-61632000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:61624600-61631200	Weak transcription	Fetal Lung	lung
7	chr10:61624800-61633000	Weak transcription	Brain Germinal Matrix	brain
8	chr10:61624800-61641000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:61625000-61632000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:61625000-61632000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:61625000-61632600	Weak transcription	Ovary	ovary
12	chr10:61625000-61638800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:61625200-61631600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:61625200-61632000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:61625200-61639200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:61625400-61631600	Weak transcription	Primary B cells from cord blood	blood
18	chr10:61625400-61631600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:61625600-61631400	Weak transcription	GM12878-XiMat	blood
20	chr10:61625600-61631600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:61625800-61632600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:61626000-61631600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:61626000-61631800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:61626000-61632200	Weak transcription	NHEK	skin
25	chr10:61626000-61632400	Weak transcription	Adipose Nuclei	Adipose
26	chr10:61626200-61631400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:61626400-61631400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:61626400-61632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:61626600-61631800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:61626800-61631400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:61627000-61631600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:61627000-61632600	Weak transcription	Brain Substantia Nigra	brain
33	chr10:61628000-61630800	Enhancers	Brain Anterior Caudate	brain
34	chr10:61628400-61630800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr10:61628400-61632400	Enhancers	Colon Smooth Muscle	Colon
36	chr10:61628600-61631400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:61628600-61632800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:61628600-61632800	Enhancers	K562	blood
39	chr10:61628600-61638600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:61628800-61632000	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:61628800-61632000	Weak transcription	Spleen	Spleen
42	chr10:61628800-61632600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:61628800-61632600	Enhancers	Stomach Smooth Muscle	stomach
44	chr10:61629000-61632000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr10:61629000-61632000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:61629000-61632400	Weak transcription	Liver	Liver
47	chr10:61629000-61633000	Weak transcription	Hela-S3	cervix
48	chr10:61629000-61634200	Weak transcription	HepG2	liver
49	chr10:61629400-61631400	Weak transcription	Primary T cells from cord blood	blood
50	chr10:61629400-61631800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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