Variant report

Variant	rs1627130
Chromosome Location	chr10:61635025-61635026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61633677..61637740-chr10:61638115..61642166,4	K562	blood:
2	chr10:61631791..61635794-chr10:61666340..61668454,4	K562	blood:
3	chr10:61633143..61635751-chr10:61635824..61637359,2	K562	blood:
4	chr10:61633082..61635671-chr10:61637536..61639687,3	MCF-7	breast:
5	chr10:61628499..61631972-chr10:61632717..61636046,5	K562	blood:
6	chr10:61634776..61635754-chr16:9352454..9353389,2	MCF-7	breast:
7	chr10:61634142..61636332-chr10:61636728..61639636,2	MCF-7	breast:
8	chr10:61632628..61635950-chr10:61647299..61651205,3	K562	blood:
9	chr10:61628076..61632189-chr10:61632717..61638646,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1171787	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1624715	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664254	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1664257	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1664258	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664261	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1684898	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1684900	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1684903	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202345	0.80[EUR][1000 genomes]
rs17202600	0.81[AMR][1000 genomes]
rs2440906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440909	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440910	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440911	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450469	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2450471	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895243	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:61624800-61641000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:61625000-61638800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:61625200-61639200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:61628600-61638600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:61629800-61635400	Enhancers	Brain Hippocampus Middle	brain
9	chr10:61630000-61647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:61631000-61635600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:61631200-61635600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:61631400-61635200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:61631400-61635800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:61631600-61635600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:61631800-61635200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:61632400-61635400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:61633000-61637600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:61633000-61638200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:61633000-61638400	Weak transcription	Primary T cells from cord blood	blood
20	chr10:61633000-61638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:61633000-61638400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr10:61633000-61639200	Weak transcription	Spleen	Spleen
23	chr10:61633000-61640600	Weak transcription	Gastric	stomach
24	chr10:61633200-61635400	Enhancers	Primary B cells from peripheral blood	blood
25	chr10:61633200-61637000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:61633200-61638600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:61633200-61638600	Weak transcription	A549	lung
28	chr10:61633200-61639400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:61633200-61640600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:61633200-61641800	Weak transcription	Lung	lung
31	chr10:61633400-61636400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:61633400-61636600	Weak transcription	HSMM	muscle
33	chr10:61633400-61636800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:61633400-61637000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:61633400-61637000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:61633400-61637200	Weak transcription	Ovary	ovary
37	chr10:61633400-61637400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:61633400-61638000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:61633400-61638200	Weak transcription	Psoas Muscle	Psoas
40	chr10:61633400-61638600	Weak transcription	Thymus	Thymus
41	chr10:61633400-61638800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr10:61633400-61639400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:61633400-61643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:61633400-61645200	Weak transcription	Fetal Thymus	thymus
45	chr10:61633400-61647800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:61633400-61647800	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:61633400-61647800	Weak transcription	Fetal Stomach	stomach
48	chr10:61633400-61648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:61633600-61637400	Weak transcription	NHDF-Ad	bronchial
50	chr10:61633600-61645200	Weak transcription	Brain Germinal Matrix	brain

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