Variant report

Variant	rs1171787
Chromosome Location	chr10:61625004-61625005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61606026..61608992-chr10:61624658..61626337,2	K562	blood:
2	chr10:61622142..61625052-chr10:61830945..61832691,2	K562	blood:
3	chr10:61624578..61625508-chr10:61792243..61793150,3	MCF-7	breast:
4	chr10:61624637..61625250-chr10:62193908..62194412,2	K562	blood:
5	chr10:61613806..61616077-chr10:61621477..61625736,3	MCF-7	breast:
6	chr10:61623049..61625625-chr10:61665544..61668318,6	MCF-7	breast:
7	chr10:61624586..61625564-chr10:61792231..61793204,4	K562	blood:
8	chr10:61623680..61630815-chr10:61664299..61668134,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509114	0.94[EUR][1000 genomes]
rs1624715	0.95[ASN][1000 genomes]
rs1627130	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1627152	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1628136	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1664254	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1664257	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1664258	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1664260	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1664261	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1664262	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1664263	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1684898	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1684900	0.95[ASN][1000 genomes]
rs1684902	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1684903	0.95[ASN][1000 genomes]
rs17201105	0.81[EUR][1000 genomes]
rs17202600	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17790901	0.81[EUR][1000 genomes]
rs17791132	0.83[EUR][1000 genomes]
rs2440906	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2440908	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2440909	0.95[ASN][1000 genomes]
rs2440910	0.95[ASN][1000 genomes]
rs2440911	0.95[ASN][1000 genomes]
rs2450468	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2450469	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2450471	0.95[ASN][1000 genomes]
rs4146652	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4948369	0.81[EUR][1000 genomes]
rs55909789	0.84[EUR][1000 genomes]
rs61848700	0.85[EUR][1000 genomes]
rs61848703	0.85[EUR][1000 genomes]
rs61848704	0.92[EUR][1000 genomes]
rs61848705	0.92[EUR][1000 genomes]
rs61848728	0.87[EUR][1000 genomes]
rs895243	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:61593200-61629400	Weak transcription	Lung	lung
4	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:61610400-61628000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:61614200-61629400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:61615200-61628000	Weak transcription	Esophagus	oesophagus
8	chr10:61616600-61626600	Weak transcription	Aorta	Aorta
9	chr10:61618000-61632600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:61618400-61628600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:61618600-61633200	Weak transcription	HSMM	muscle
12	chr10:61618800-61625200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:61621200-61628400	Weak transcription	Fetal Intestine Large	intestine
14	chr10:61621200-61630200	Weak transcription	Fetal Stomach	stomach
15	chr10:61621800-61628400	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:61623600-61625600	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:61623600-61626200	Enhancers	Fetal Heart	heart
18	chr10:61623800-61625200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr10:61623800-61625800	Enhancers	Liver	Liver
20	chr10:61623800-61626800	Enhancers	Colon Smooth Muscle	Colon
21	chr10:61623800-61628000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:61624000-61625200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:61624000-61625200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:61624000-61625200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:61624000-61625200	Enhancers	Brain Anterior Caudate	brain
26	chr10:61624000-61625200	Enhancers	Right Atrium	heart
27	chr10:61624000-61625400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr10:61624000-61625600	Enhancers	Psoas Muscle	Psoas
29	chr10:61624000-61625800	Enhancers	Left Ventricle	heart
30	chr10:61624000-61626000	Enhancers	Small Intestine	intestine
31	chr10:61624000-61626200	Enhancers	HMEC	breast
32	chr10:61624000-61626600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr10:61624000-61626800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr10:61624200-61625200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr10:61624200-61625200	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr10:61624200-61625200	Enhancers	Rectal Smooth Muscle	rectum
37	chr10:61624200-61625200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr10:61624200-61625400	Enhancers	Primary B cells from cord blood	blood
39	chr10:61624200-61625400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:61624200-61625400	Enhancers	Brain Hippocampus Middle	brain
41	chr10:61624200-61626000	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr10:61624200-61626000	Enhancers	Fetal Thymus	thymus
43	chr10:61624200-61626400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr10:61624200-61626600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:61624200-61627000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:61624200-61627000	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr10:61624200-61627200	Enhancers	Primary B cells from peripheral blood	blood
48	chr10:61624200-61627400	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr10:61624200-61630400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:61624400-61625200	Enhancers	Primary hematopoietic stem cells	blood

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