Variant report

Variant	rs61848700
Chromosome Location	chr10:61601589-61601590
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61600999..61602760-chr10:61603258..61605542,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509114	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1171787	0.85[EUR][1000 genomes]
rs17201105	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17202345	0.89[ASN][1000 genomes]
rs17202600	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17790901	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17791132	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17791436	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791484	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271561	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948368	0.95[ASN][1000 genomes]
rs4948369	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948370	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55826266	0.95[ASN][1000 genomes]
rs55909789	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848703	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848704	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848705	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848728	0.89[ASN][1000 genomes]
rs7475730	0.90[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61609200	Weak transcription	NHLF	lung
3	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
4	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
5	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
13	chr10:61583200-61606600	Weak transcription	Pancreas	Pancrea
14	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:61584400-61607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:61586000-61605600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:61586000-61612200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:61586400-61606600	Weak transcription	Gastric	stomach
19	chr10:61586400-61606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:61587000-61612000	Weak transcription	Ovary	ovary
21	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:61591600-61609400	Weak transcription	Brain Germinal Matrix	brain
23	chr10:61591800-61603200	Weak transcription	Hela-S3	cervix
24	chr10:61591800-61607200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:61591800-61607600	Weak transcription	A549	lung
26	chr10:61591800-61609000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:61592200-61601600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:61592200-61601800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:61592200-61605400	Weak transcription	Adipose Nuclei	Adipose
31	chr10:61592400-61602800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:61592400-61605200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:61592400-61605400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:61592400-61605600	Weak transcription	Liver	Liver
35	chr10:61592400-61607600	Weak transcription	Fetal Lung	lung
36	chr10:61592600-61603400	Weak transcription	Dnd41	blood
37	chr10:61592600-61605400	Weak transcription	HepG2	liver
38	chr10:61592600-61605600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:61592600-61608800	Weak transcription	HUVEC	blood vessel
40	chr10:61592600-61616600	Weak transcription	NH-A	brain
41	chr10:61593200-61629400	Weak transcription	Lung	lung
42	chr10:61594000-61606600	Weak transcription	Right Ventricle	heart
43	chr10:61594000-61614000	Weak transcription	Small Intestine	intestine
44	chr10:61594800-61603200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr10:61595200-61607200	Weak transcription	Thymus	Thymus
46	chr10:61595200-61614000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:61595800-61602000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:61595800-61607200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:61595800-61624000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:61596000-61602800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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