Variant report

Variant	rs55826266
Chromosome Location	chr10:61583195-61583196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61582052..61584614-chr10:61587105..61589792,2	MCF-7	breast:
2	chr10:61580754..61584536-chr10:61589031..61592298,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10509114	0.89[ASN][1000 genomes]
rs10761418	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17201105	1.00[ASN][1000 genomes]
rs17202345	0.84[ASN][1000 genomes]
rs17202600	0.84[ASN][1000 genomes]
rs17790901	1.00[ASN][1000 genomes]
rs17791132	1.00[ASN][1000 genomes]
rs17791436	0.95[ASN][1000 genomes]
rs17791484	0.95[ASN][1000 genomes]
rs1822913	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2271561	0.95[ASN][1000 genomes]
rs4948368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948369	1.00[ASN][1000 genomes]
rs4948370	0.95[ASN][1000 genomes]
rs55909789	0.95[ASN][1000 genomes]
rs61848693	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61848700	0.95[ASN][1000 genomes]
rs61848703	0.95[ASN][1000 genomes]
rs61848704	0.89[ASN][1000 genomes]
rs61848705	0.89[ASN][1000 genomes]
rs61848728	0.84[ASN][1000 genomes]
rs7475730	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
4	chr10:61571000-61591200	Weak transcription	NHEK	skin
5	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
6	chr10:61571600-61583600	Weak transcription	GM12878-XiMat	blood
7	chr10:61571600-61585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:61571600-61585800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:61571600-61585800	Weak transcription	Lung	lung
10	chr10:61571600-61585800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
13	chr10:61571600-61609200	Weak transcription	NHLF	lung
14	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
15	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
16	chr10:61572200-61585200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:61572400-61589200	Weak transcription	K562	blood
18	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
19	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:61572600-61583600	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:61572600-61584200	Weak transcription	Fetal Lung	lung
22	chr10:61572800-61591200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:61572800-61591200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:61573400-61585600	Weak transcription	Adipose Nuclei	Adipose
26	chr10:61574200-61586200	Weak transcription	Placenta	Placenta
27	chr10:61574200-61589000	Weak transcription	Liver	Liver
28	chr10:61574200-61589200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:61574600-61588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:61574600-61589000	Weak transcription	HMEC	breast
31	chr10:61574600-61589200	Weak transcription	Fetal Thymus	thymus
32	chr10:61574800-61587400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:61574800-61589400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:61575000-61584000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:61576000-61586800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
37	chr10:61578000-61585000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr10:61578000-61585800	Weak transcription	Gastric	stomach
39	chr10:61578000-61586400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:61578000-61590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:61578000-61590600	Weak transcription	NH-A	brain
42	chr10:61578000-61590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:61578000-61591400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:61578200-61585800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:61578200-61589600	Weak transcription	Brain Angular Gyrus	brain
47	chr10:61578200-61590400	Weak transcription	Osteobl	bone
48	chr10:61578200-61590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:61578200-61591200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:61578200-61591400	Weak transcription	Esophagus	oesophagus

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