Variant report

Variant	rs10761418
Chromosome Location	chr10:61592966-61592967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61592330..61594284-chr10:61664779..61667525,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10994058	0.89[ASN][1000 genomes]
rs1445388	0.95[ASN][1000 genomes]
rs1822913	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948368	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55826266	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61848693	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7475730	0.81[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
2	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
3	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
5	chr10:61571600-61609200	Weak transcription	NHLF	lung
6	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
7	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
8	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
11	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:61578200-61595400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
14	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:61579800-61595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:61580000-61595200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
22	chr10:61581000-61598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:61581400-61597800	Weak transcription	Brain Substantia Nigra	brain
24	chr10:61583200-61595400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:61583200-61606600	Weak transcription	Pancreas	Pancrea
26	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:61584400-61607200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:61586000-61605600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:61586000-61612200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:61586200-61597800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:61586400-61593600	Weak transcription	Psoas Muscle	Psoas
32	chr10:61586400-61594600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:61586400-61595000	Weak transcription	Thymus	Thymus
34	chr10:61586400-61606600	Weak transcription	Gastric	stomach
35	chr10:61586400-61606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:61586600-61593600	Weak transcription	Right Ventricle	heart
37	chr10:61587000-61612000	Weak transcription	Ovary	ovary
38	chr10:61587400-61594400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:61589000-61593600	Weak transcription	Stomach Mucosa	stomach
40	chr10:61589000-61598000	Weak transcription	Right Atrium	heart
41	chr10:61589200-61593000	Strong transcription	Fetal Thymus	thymus
42	chr10:61589200-61599000	Weak transcription	NHDF-Ad	bronchial
43	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:61589600-61594600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:61590600-61594400	Weak transcription	Brain Angular Gyrus	brain
46	chr10:61590800-61593400	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:61590800-61593800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr10:61591200-61593000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:61591200-61593200	Strong transcription	Lung	lung
50	chr10:61591400-61598800	Weak transcription	Osteobl	bone

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