Variant report

Variant	rs4948368
Chromosome Location	chr10:61584835-61584836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10509114	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.89[ASN][1000 genomes]
rs10761418	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10994058	0.88[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs12571632	0.86[CHB][hapmap]
rs12573055	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12776024	0.81[MEX][hapmap]
rs1664276	1.00[JPT][hapmap]
rs17201105	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17202345	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17202600	0.85[CHB][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs17790289	0.86[CHB][hapmap]
rs17790901	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17791132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17791436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17791484	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[ASN][1000 genomes]
rs17793021	1.00[JPT][hapmap]
rs1822913	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1972950	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs2271561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2271564	1.00[CHD][hapmap]
rs3763743	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3763745	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs3793866	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4948249	1.00[JPT][hapmap]
rs4948367	0.86[CHB][hapmap];1.00[CHD][hapmap]
rs4948369	1.00[ASN][1000 genomes]
rs4948370	0.95[ASN][1000 genomes]
rs55826266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909789	0.95[ASN][1000 genomes]
rs61848693	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61848700	0.95[ASN][1000 genomes]
rs61848703	0.95[ASN][1000 genomes]
rs61848704	0.89[ASN][1000 genomes]
rs61848705	0.89[ASN][1000 genomes]
rs61848728	0.84[ASN][1000 genomes]
rs7475730	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
3	chr10:61571000-61591200	Weak transcription	NHEK	skin
4	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
5	chr10:61571600-61585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:61571600-61585800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:61571600-61585800	Weak transcription	Lung	lung
8	chr10:61571600-61585800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
11	chr10:61571600-61609200	Weak transcription	NHLF	lung
12	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
13	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
14	chr10:61572200-61585200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:61572400-61589200	Weak transcription	K562	blood
16	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
17	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:61572800-61591200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:61572800-61591200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:61573400-61585600	Weak transcription	Adipose Nuclei	Adipose
22	chr10:61574200-61586200	Weak transcription	Placenta	Placenta
23	chr10:61574200-61589000	Weak transcription	Liver	Liver
24	chr10:61574200-61589200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:61574600-61588400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:61574600-61589000	Weak transcription	HMEC	breast
27	chr10:61574600-61589200	Weak transcription	Fetal Thymus	thymus
28	chr10:61574800-61587400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:61574800-61589400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:61576000-61586800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
32	chr10:61578000-61585000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr10:61578000-61585800	Weak transcription	Gastric	stomach
34	chr10:61578000-61586400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:61578000-61590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:61578000-61590600	Weak transcription	NH-A	brain
37	chr10:61578000-61590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:61578000-61591400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:61578200-61585800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:61578200-61589600	Weak transcription	Brain Angular Gyrus	brain
42	chr10:61578200-61590400	Weak transcription	Osteobl	bone
43	chr10:61578200-61590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:61578200-61591200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr10:61578200-61591400	Weak transcription	Esophagus	oesophagus
46	chr10:61578200-61595400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
48	chr10:61578400-61585600	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:61578400-61585800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:61578400-61586200	Weak transcription	Primary monocytes fromperipheralblood	blood

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