Variant report

Variant	rs3763743
Chromosome Location	chr10:61669051-61669052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61667263..61669054-chr10:61680028..61682493,2	MCF-7	breast:
2	chr10:61667421..61670860-chr10:61671929..61674509,5	K562	blood:
3	chr10:61667520..61669749-chr10:61807482..61809424,2	MCF-7	breast:
4	chr10:61666876..61669628-chr10:61791272..61793178,2	MCF-7	breast:
5	chr10:61632812..61634893-chr10:61666626..61669207,2	K562	blood:
6	chr10:61669028..61671045-chr10:61674593..61676546,3	MCF-7	breast:
7	chr10:61666545..61669325-chr10:61676846..61678686,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10509114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1171833	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11817261	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11819256	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1183347	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12572828	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12573055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1664257	0.86[CEU][hapmap]
rs1664276	1.00[JPT][hapmap]
rs1684898	0.87[CEU][hapmap]
rs17201105	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17202345	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17202600	1.00[CHB][hapmap]
rs17790901	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17791132	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17791436	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17791484	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17793021	1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1972950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2271561	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3763745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3793866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4948249	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4948368	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs56221953	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61845881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845885	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7478076	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61668400-61669800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:61668400-61671000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:61668600-61669200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:61668600-61669600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:61668600-61669600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:61668600-61669800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:61668600-61670200	Weak transcription	Fetal Stomach	stomach
8	chr10:61668600-61670200	Enhancers	NHEK	skin
9	chr10:61668600-61670400	Enhancers	K562	blood
10	chr10:61668600-61671200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:61668600-61671200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:61668800-61669400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:61668800-61669600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr10:61668800-61669600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:61668800-61669800	Enhancers	Stomach Smooth Muscle	stomach
16	chr10:61668800-61669800	Enhancers	Hela-S3	cervix
17	chr10:61668800-61671000	Weak transcription	Fetal Lung	lung
18	chr10:61669000-61669400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr10:61669000-61669600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:61669000-61669800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:61669000-61670800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:61669000-61670800	Weak transcription	Osteobl	bone
23	chr10:61669000-61673800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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