Variant report

Variant	rs56221953
Chromosome Location	chr10:61663894-61663895
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61615112..61617171-chr10:61663279..61664781,2	MCF-7	breast:
2	chr10:61594610..61596651-chr10:61661878..61664205,2	K562	blood:
3	chr10:61661963..61664576-chr10:61749051..61751954,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1171833	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11817261	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11819256	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1183347	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1664276	0.84[EUR][1000 genomes]
rs1664278	0.86[EUR][1000 genomes]
rs1664279	0.86[EUR][1000 genomes]
rs1664280	0.86[EUR][1000 genomes]
rs1664281	0.86[EUR][1000 genomes]
rs1684904	0.86[EUR][1000 genomes]
rs1684916	0.85[EUR][1000 genomes]
rs17793021	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1972950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440916	0.86[EUR][1000 genomes]
rs2440918	0.85[EUR][1000 genomes]
rs2450462	0.85[EUR][1000 genomes]
rs2450463	0.85[EUR][1000 genomes]
rs3763743	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3763745	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3793866	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948249	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61845881	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61845882	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61845883	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61845885	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7478076	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
3	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:61654800-61664000	Weak transcription	NHLF	lung
7	chr10:61656200-61664000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:61656200-61664200	Weak transcription	Right Ventricle	heart
9	chr10:61657600-61664200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:61658400-61664000	Weak transcription	Liver	Liver
11	chr10:61658400-61664000	Weak transcription	Right Atrium	heart
12	chr10:61658600-61664200	Weak transcription	Left Ventricle	heart
13	chr10:61658800-61664000	Weak transcription	Fetal Kidney	kidney
14	chr10:61659400-61664600	Weak transcription	HSMMtube	muscle
15	chr10:61659800-61664000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:61659800-61664000	Enhancers	HMEC	breast
17	chr10:61659800-61664000	Weak transcription	HUVEC	blood vessel
18	chr10:61660400-61664000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:61660400-61664000	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:61660400-61664000	Weak transcription	Fetal Stomach	stomach
21	chr10:61660400-61664200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:61660400-61664200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:61660600-61664200	Weak transcription	Spleen	Spleen
24	chr10:61660600-61664600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:61660800-61664200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:61660800-61664200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:61660800-61664400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:61661200-61665000	Enhancers	Small Intestine	intestine
29	chr10:61661400-61664000	Enhancers	HepG2	liver
30	chr10:61661600-61664200	Weak transcription	Gastric	stomach
31	chr10:61661800-61664000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:61662000-61664000	Weak transcription	Colonic Mucosa	Colon
33	chr10:61662000-61664000	Weak transcription	Esophagus	oesophagus
34	chr10:61662000-61664200	Weak transcription	Pancreas	Pancrea
35	chr10:61662400-61664400	Weak transcription	Ovary	ovary
36	chr10:61662800-61664000	Enhancers	Thymus	Thymus
37	chr10:61662800-61664200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr10:61663000-61664000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr10:61663000-61664000	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr10:61663000-61664200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:61663000-61664400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:61663000-61664400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:61663000-61664400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr10:61663000-61664400	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr10:61663000-61664800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:61663200-61664000	Enhancers	Brain Germinal Matrix	brain
47	chr10:61663200-61664000	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr10:61663200-61664000	Enhancers	Dnd41	blood
49	chr10:61663200-61664200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:61663200-61664200	Weak transcription	Lung	lung

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