Variant report

Variant	rs17793021
Chromosome Location	chr10:61659821-61659822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61645422..61647388-chr10:61657593..61660192,2	K562	blood:
2	chr10:61654182..61656949-chr10:61658544..61661969,6	MCF-7	breast:
3	chr10:61655581..61657205-chr10:61658249..61660092,2	K562	blood:
4	chr10:61630078..61632932-chr10:61659731..61661689,2	MCF-7	breast:
5	chr10:61631763..61634620-chr10:61659289..61660920,2	MCF-7	breast:
6	chr10:61646248..61649681-chr10:61659057..61661794,4	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509114	1.00[JPT][hapmap]
rs1171833	0.80[AMR][1000 genomes]
rs11817261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1183347	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12572828	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12573055	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1664276	1.00[JPT][hapmap]
rs17201105	1.00[JPT][hapmap]
rs17202345	1.00[JPT][hapmap]
rs17790901	1.00[JPT][hapmap]
rs17791132	1.00[JPT][hapmap]
rs17791436	1.00[JPT][hapmap]
rs17791484	1.00[JPT][hapmap]
rs1972950	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2271561	1.00[JPT][hapmap]
rs3763743	1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3763745	1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3793866	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948249	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948368	1.00[JPT][hapmap]
rs56221953	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845881	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845882	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845883	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845885	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7478076	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
3	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:61651200-61662000	Enhancers	Stomach Mucosa	stomach
6	chr10:61651200-61663400	Enhancers	Colon Smooth Muscle	Colon
7	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:61651800-61662000	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:61653400-61660000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:61653400-61660600	Enhancers	Fetal Intestine Small	intestine
11	chr10:61653400-61661800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr10:61653400-61663800	Enhancers	Fetal Intestine Large	intestine
13	chr10:61653800-61661800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:61654200-61663200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:61654400-61661400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:61654400-61663400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:61654800-61663400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:61654800-61663800	Weak transcription	HSMM	muscle
19	chr10:61654800-61664000	Weak transcription	NHLF	lung
20	chr10:61655600-61663800	Weak transcription	Osteobl	bone
21	chr10:61656000-61663800	Weak transcription	NH-A	brain
22	chr10:61656200-61660000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:61656200-61661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:61656200-61661400	Weak transcription	Colonic Mucosa	Colon
25	chr10:61656200-61661600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:61656200-61663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:61656200-61664000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:61656200-61664200	Weak transcription	Right Ventricle	heart
29	chr10:61656400-61661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:61656400-61662800	Weak transcription	Brain Substantia Nigra	brain
31	chr10:61656400-61663200	Weak transcription	Brain Angular Gyrus	brain
32	chr10:61656800-61661400	Weak transcription	HepG2	liver
33	chr10:61657400-61660800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:61657600-61660400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:61657600-61661000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:61657600-61661800	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr10:61657600-61662000	Enhancers	Pancreas	Pancrea
38	chr10:61657600-61662000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:61657600-61663800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:61657600-61664200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:61657800-61661000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr10:61658000-61661200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:61658200-61660200	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr10:61658200-61660200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr10:61658200-61660400	Enhancers	K562	blood
46	chr10:61658200-61661000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:61658200-61662000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr10:61658200-61663200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:61658400-61660200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:61658400-61660200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links