Variant report

Variant	rs4948249
Chromosome Location	chr10:61705112-61705113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61695241..61697293-chr10:61702502..61705874,3	MCF-7	breast:
2	chr10:61665357..61667924-chr10:61701547..61705798,5	MCF-7	breast:
3	chr10:61703836..61706924-chr10:61718320..61719980,3	MCF-7	breast:
4	chr10:61703565..61709814-chr10:61724833..61727412,7	MCF-7	breast:
5	chr10:61665632..61668478-chr10:61702558..61705460,3	MCF-7	breast:
6	chr10:61702627..61705197-chr10:61707163..61708770,2	MCF-7	breast:
7	chr10:61702957..61706196-chr10:61723593..61729124,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction
ENSG00000235931	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10509114	1.00[JPT][hapmap]
rs11817261	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11819256	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1183347	0.81[AMR][1000 genomes]
rs12572828	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12573055	1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1664257	0.81[CEU][hapmap]
rs1664276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1684898	0.83[CEU][hapmap]
rs17201105	1.00[JPT][hapmap]
rs17202345	1.00[JPT][hapmap]
rs17790901	1.00[JPT][hapmap]
rs17791132	1.00[JPT][hapmap]
rs17791436	1.00[JPT][hapmap]
rs17791484	1.00[JPT][hapmap]
rs17793021	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1972950	1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2271561	1.00[JPT][hapmap]
rs3763743	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3763745	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3793866	1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948368	1.00[JPT][hapmap]
rs56221953	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61845881	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61845882	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61845883	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61845885	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7478076	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61704200-61705600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:61704400-61705400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:61704600-61705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:61704800-61706600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:61705000-61705800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:61705000-61706600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:61705000-61706600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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