Variant report

Variant	rs61848728
Chromosome Location	chr10:61627722-61627723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61623680..61630815-chr10:61664299..61668134,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10509114	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1171787	0.87[EUR][1000 genomes]
rs1664257	0.82[AMR][1000 genomes]
rs17201105	0.84[ASN][1000 genomes]
rs17202345	0.89[ASN][1000 genomes]
rs17202600	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790901	0.84[ASN][1000 genomes]
rs17791132	0.84[ASN][1000 genomes]
rs17791436	0.89[ASN][1000 genomes]
rs17791484	0.89[ASN][1000 genomes]
rs2271561	0.89[ASN][1000 genomes]
rs4948368	0.84[ASN][1000 genomes]
rs4948369	0.84[ASN][1000 genomes]
rs55826266	0.84[ASN][1000 genomes]
rs55909789	0.89[ASN][1000 genomes]
rs61848700	0.89[ASN][1000 genomes]
rs61848703	0.89[ASN][1000 genomes]
rs61848704	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848705	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:61593200-61629400	Weak transcription	Lung	lung
4	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:61610400-61628000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:61614200-61629400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:61615200-61628000	Weak transcription	Esophagus	oesophagus
8	chr10:61618000-61632600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:61618400-61628600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:61618600-61633200	Weak transcription	HSMM	muscle
11	chr10:61621200-61628400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:61621200-61630200	Weak transcription	Fetal Stomach	stomach
13	chr10:61621800-61628400	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:61623800-61628000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:61624200-61630400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:61624400-61630400	Enhancers	Pancreas	Pancrea
17	chr10:61624400-61632000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:61624600-61631200	Weak transcription	Fetal Lung	lung
19	chr10:61624800-61628600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:61624800-61633000	Weak transcription	Brain Germinal Matrix	brain
21	chr10:61624800-61641000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:61625000-61627800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:61625000-61627800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:61625000-61628200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:61625000-61628200	Weak transcription	Hela-S3	cervix
26	chr10:61625000-61628400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:61625000-61628800	Weak transcription	Right Ventricle	heart
28	chr10:61625000-61628800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:61625000-61629400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:61625000-61629400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:61625000-61629400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:61625000-61632000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:61625000-61632000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:61625000-61632600	Weak transcription	Ovary	ovary
35	chr10:61625000-61638800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:61625200-61628000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:61625200-61628400	Weak transcription	Fetal Intestine Small	intestine
39	chr10:61625200-61628400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:61625200-61629800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:61625200-61631600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:61625200-61632000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:61625200-61639200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:61625400-61631600	Weak transcription	Primary B cells from cord blood	blood
45	chr10:61625400-61631600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:61625600-61627800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:61625600-61628200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:61625600-61629400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:61625600-61631400	Weak transcription	GM12878-XiMat	blood
50	chr10:61625600-61631600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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