Variant report

Variant	rs61848704
Chromosome Location	chr10:61615033-61615034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61610249..61613076-chr10:61614715..61617033,2	MCF-7	breast:
2	chr10:61612117..61617926-chr10:61664918..61668274,7	MCF-7	breast:
3	chr10:61596064..61599024-chr10:61613612..61615480,2	MCF-7	breast:
4	chr10:61613806..61616077-chr10:61621477..61625736,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10509114	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171787	0.92[EUR][1000 genomes]
rs1684898	0.81[EUR][1000 genomes]
rs17201105	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17202345	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17202600	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17790901	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17791132	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17791436	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17791484	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2271561	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948368	0.89[ASN][1000 genomes]
rs4948369	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948370	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55826266	0.89[ASN][1000 genomes]
rs55909789	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848700	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848703	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848728	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7475730	0.85[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
3	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
8	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:61592600-61616600	Weak transcription	NH-A	brain
12	chr10:61593200-61629400	Weak transcription	Lung	lung
13	chr10:61595800-61624000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:61600000-61616400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:61603800-61618400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:61605400-61618400	Weak transcription	Fetal Heart	heart
17	chr10:61606200-61616200	Weak transcription	NHDF-Ad	bronchial
18	chr10:61608000-61615600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:61608000-61617800	Weak transcription	Pancreas	Pancrea
20	chr10:61608000-61618200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:61608000-61624000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:61608000-61624200	Weak transcription	Right Ventricle	heart
23	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:61609200-61616200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:61609200-61617800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:61609400-61615600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:61609600-61616200	Weak transcription	HSMM	muscle
28	chr10:61609800-61617000	Weak transcription	Osteobl	bone
29	chr10:61610000-61616600	Weak transcription	NHLF	lung
30	chr10:61610000-61619600	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:61610000-61624200	Weak transcription	Fetal Thymus	thymus
32	chr10:61610200-61618400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:61610200-61624000	Weak transcription	Hela-S3	cervix
34	chr10:61610200-61624400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:61610400-61617600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:61610400-61619800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:61610400-61624200	Weak transcription	Thymus	Thymus
38	chr10:61610400-61624400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:61610400-61628000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:61610600-61615800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:61610800-61624400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:61611800-61618000	Enhancers	Brain Anterior Caudate	brain
43	chr10:61612000-61616600	Enhancers	Colon Smooth Muscle	Colon
44	chr10:61612000-61624000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:61612000-61624000	Weak transcription	HMEC	breast
46	chr10:61612200-61616600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:61612200-61622200	Weak transcription	Dnd41	blood
48	chr10:61612200-61623800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:61612200-61624800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:61612400-61615200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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