Variant report
| Variant | rs12776024 |
|---|---|
| Chromosome Location | chr10:61714103-61714104 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000108091 | Chromatin interaction |
| ENSG00000235931 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1171833 | 0.85[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12763583 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12784462 | 0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1624715 | 0.85[CHB][hapmap] |
| rs1664254 | 0.84[CHB][hapmap] |
| rs1664257 | 0.85[CHB][hapmap] |
| rs1664258 | 0.85[CHB][hapmap] |
| rs1664262 | 0.85[CHB][hapmap] |
| rs1664278 | 0.94[ASN][1000 genomes] |
| rs1664279 | 0.94[ASN][1000 genomes] |
| rs1664280 | 0.94[ASN][1000 genomes] |
| rs1664281 | 0.94[ASN][1000 genomes] |
| rs1684898 | 0.85[CHB][hapmap] |
| rs1684900 | 0.85[CHB][hapmap] |
| rs1684902 | 0.84[CHB][hapmap] |
| rs1684904 | 0.94[ASN][1000 genomes] |
| rs1684916 | 0.94[ASN][1000 genomes] |
| rs1822913 | 0.81[MEX][hapmap] |
| rs2166270 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2166271 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2440906 | 0.85[CHB][hapmap] |
| rs2440910 | 0.85[CHB][hapmap] |
| rs2440916 | 0.94[ASN][1000 genomes] |
| rs2440918 | 1.00[CHB][hapmap];0.94[ASN][1000 genomes] |
| rs2450462 | 0.94[ASN][1000 genomes] |
| rs2450463 | 0.94[ASN][1000 genomes] |
| rs2450468 | 0.85[CHB][hapmap] |
| rs3763745 | 0.81[MEX][hapmap] |
| rs4948368 | 0.81[MEX][hapmap] |
| rs895243 | 0.85[CHB][hapmap] |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12776024 | CBLN4 | trans | cerebellum | SCAN |
| rs12776024 | SLC16A9 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61713800-61714600 | Enhancers | Muscle Satellite Cultured Cells | -- |
