Variant report

Variant	rs12571632
Chromosome Location	chr10:61560818-61560819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61556023..61558278-chr10:61560219..61561760,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10994001	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1127327	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12250019	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12250305	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12256258	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12569631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573055	0.82[CHB][hapmap]
rs12573796	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17199652	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17199988	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17201105	0.86[CHB][hapmap]
rs17789329	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17790289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790901	0.86[CHB][hapmap]
rs17791132	0.86[CHB][hapmap]
rs17791436	0.86[CHB][hapmap]
rs17791484	0.86[CHB][hapmap]
rs2175913	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2271561	0.86[CHB][hapmap]
rs2271564	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2393567	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4597020	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948238	0.86[JPT][hapmap]
rs4948367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948368	0.86[CHB][hapmap]
rs56232063	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56247613	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72815892	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72815897	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72817909	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72817910	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72817915	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269619	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
5	chr10:61548200-61563200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:61548600-61573000	Strong transcription	Dnd41	blood
7	chr10:61549600-61572000	Strong transcription	Liver	Liver
8	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
9	chr10:61549800-61567400	Weak transcription	Fetal Heart	heart
10	chr10:61549800-61569000	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:61550200-61561800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:61550400-61566600	Weak transcription	Fetal Brain Male	brain
13	chr10:61550400-61568800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:61550400-61569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:61550800-61564000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:61551400-61561800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:61551800-61563200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:61553000-61562800	Weak transcription	Gastric	stomach
19	chr10:61553000-61563000	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:61553000-61563400	Weak transcription	Colonic Mucosa	Colon
21	chr10:61553000-61564400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:61553000-61571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:61553200-61563400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:61553200-61563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:61553200-61564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:61553400-61562800	Weak transcription	Lung	lung
27	chr10:61553400-61563200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:61553400-61563200	Weak transcription	Brain Germinal Matrix	brain
29	chr10:61553400-61563200	Weak transcription	Right Ventricle	heart
30	chr10:61554200-61561200	Weak transcription	HepG2	liver
31	chr10:61554200-61563200	Weak transcription	Hela-S3	cervix
32	chr10:61554200-61563400	Weak transcription	HUVEC	blood vessel
33	chr10:61554400-61561000	Weak transcription	Fetal Lung	lung
34	chr10:61554400-61561000	Weak transcription	Ovary	ovary
35	chr10:61554400-61562200	Weak transcription	A549	lung
36	chr10:61554400-61562800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:61554400-61562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:61554400-61562800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:61554400-61562800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:61554400-61562800	Weak transcription	Aorta	Aorta
41	chr10:61554400-61562800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:61554400-61562800	Weak transcription	Small Intestine	intestine
43	chr10:61554400-61563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:61554400-61563200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:61554400-61563200	Weak transcription	NHLF	lung
46	chr10:61554400-61563400	Weak transcription	Brain Substantia Nigra	brain
47	chr10:61554600-61562600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:61554600-61562800	Weak transcription	HMEC	breast
49	chr10:61554600-61562800	Weak transcription	HSMMtube	muscle
50	chr10:61554600-61564200	Weak transcription	Fetal Brain Female	brain

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