Variant report

Variant	rs17789329
Chromosome Location	chr10:61546859-61546860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10994001	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1127327	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12250019	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12250305	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12256258	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12569631	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12571632	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12573796	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17199652	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17199988	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17790289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2175913	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2271564	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2393567	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597020	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948238	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4948367	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56232063	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56247613	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815892	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72817909	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72817910	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72817915	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73269619	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3438914	chr10:61542246-61547444	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61548600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
4	chr10:61540200-61549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:61540200-61550400	Weak transcription	NH-A	brain
7	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
9	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
13	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:61540800-61548800	Weak transcription	Psoas Muscle	Psoas
15	chr10:61540800-61548800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:61540800-61551600	Weak transcription	HSMM	muscle
17	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
19	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
20	chr10:61542200-61549600	Weak transcription	Brain Substantia Nigra	brain
21	chr10:61544000-61547400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:61544200-61551400	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:61544400-61549600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:61544400-61550400	Weak transcription	Primary T cells from cord blood	blood
25	chr10:61544600-61550400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:61544800-61550200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:61545000-61552400	Weak transcription	Colonic Mucosa	Colon
28	chr10:61545200-61548000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:61545600-61547200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:61545600-61549600	Weak transcription	Primary B cells from cord blood	blood
32	chr10:61545600-61551800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
34	chr10:61546000-61548200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:61546000-61548800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:61546000-61548800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:61546200-61547800	Weak transcription	Fetal Intestine Small	intestine
38	chr10:61546200-61548800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:61546200-61549600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr10:61546200-61549600	Weak transcription	Fetal Intestine Large	intestine
41	chr10:61546200-61550000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:61546200-61551400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:61546200-61551400	Weak transcription	A549	lung
44	chr10:61546200-61552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:61546200-61553800	Weak transcription	Stomach Mucosa	stomach
46	chr10:61546400-61547800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:61546400-61550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:61546600-61548000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:61546600-61548200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:61546600-61548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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