Variant report
| Variant | rs4948238 |
|---|---|
| Chromosome Location | chr10:61478390-61478391 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:61471063..61472911-chr10:61475753..61478637,2 | K562 | blood: | |
| 2 | chr10:61469713..61471887-chr10:61477464..61479752,2 | MCF-7 | breast: | |
| 3 | chr10:61450447..61453283-chr10:61477796..61479955,2 | K562 | blood: | |
| 4 | chr10:61467975..61470847-chr10:61475638..61478406,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165449 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10821582 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10821583 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10993988 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs10993989 | 0.83[EUR][1000 genomes] |
| rs10993992 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs12571632 | 0.86[JPT][hapmap] |
| rs17790289 | 0.86[JPT][hapmap] |
| rs1913511 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2271564 | 0.85[CHB][hapmap];0.85[JPT][hapmap] |
| rs4948240 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4948359 | 0.80[EUR][1000 genomes] |
| rs4948367 | 0.85[JPT][hapmap] |
| rs55981851 | 0.83[EUR][1000 genomes] |
| rs56371708 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61861084 | 0.84[EUR][1000 genomes] |
| rs61861085 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs61861088 | 0.83[EUR][1000 genomes] |
| rs61863109 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs61863111 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7067658 | 0.80[EUR][1000 genomes] |
| rs72815864 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72815872 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv975775 | chr10:61477927-61486070 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
