Variant report

Variant	rs1913511
Chromosome Location	chr10:61484005-61484006
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10821582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821583	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993988	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993989	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993992	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948238	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4948240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948359	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55981851	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56371708	0.80[EUR][1000 genomes]
rs61861084	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61861085	0.82[EUR][1000 genomes]
rs61861087	0.95[ASN][1000 genomes]
rs61861088	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61863109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863111	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067658	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72815864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72815872	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975775	chr10:61477927-61486070	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61482600-61485600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:61483400-61486600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:61483600-61484400	Weak transcription	Colonic Mucosa	Colon
4	chr10:61483600-61484400	Enhancers	Psoas Muscle	Psoas
5	chr10:61483600-61484600	Enhancers	Duodenum Mucosa	Duodenum
6	chr10:61483800-61485000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:61484000-61484200	Flanking Active TSS	Stomach Mucosa	stomach
8	chr10:61484000-61484400	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr10:61484000-61484400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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