Variant report

Variant	rs61861084
Chromosome Location	chr10:61503990-61503991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:61503989-61504039	CMK	blood:	n/a
2	chr10:61503989-61504039	Hela-S3	cervix:	n/a
3	chr10:61503989-61504039	SK-N-SH_RA	brain:	n/a
4	chr10:61503989-61504039	AG04449	skin:	fetal
5	chr10:61503989-61504039	HPAEpiC	pulmonary alveolar:	n/a
6	chr10:61503989-61504039	ECC-1	luminal epithelium:	n/a
7	chr10:61503989-61504039	HUVEC	blood vessel:	n/a
8	chr10:61503989-61504039	HIPEpiC	eye:	n/a
9	chr10:61503989-61504039	HEEpiC	esophagus:	n/a
10	chr10:61503989-61504039	MCF10A-Er-Src	breast:	n/a
11	chr10:61503989-61504039	HCT-116	colon:	n/a
12	chr10:61503989-61504039	PANC-1	pancreas:	n/a
13	chr10:61503989-61504039	MCF-7	breast:	n/a
14	chr10:61503989-61504039	SAEC	small airway:	n/a
15	chr10:61503989-61504039	Jurkat	blood:	n/a
16	chr10:61503989-61504039	HL-60	blood:	n/a
17	chr10:61503989-61504039	HRPEpiC	eye:	n/a
18	chr10:61503989-61504039	HMEC	breast:	n/a
19	chr10:61503989-61504039	BJ	skin:	n/a
20	chr10:61503989-61504039	Hepatocyte	liver:	n/a
21	chr10:61503989-61504039	GM12878	blood:	n/a
22	chr10:61503989-61504039	AG09319	gingival:	n/a
23	chr10:61503989-61504039	GM12891	blood:	n/a
24	chr10:61503989-61504039	HCF	heart:	n/a
25	chr10:61503989-61504039	HAEpiC	amniotic membrane:	n/a
26	chr10:61503989-61504039	HNPCEpiC	eye:	n/a
27	chr10:61503989-61504039	GM06990	blood:	n/a
28	chr10:61503989-61504039	AG09309	skin:	n/a
29	chr10:61503989-61504039	Caco-2	colon:	n/a
30	chr10:61503989-61504039	ProgFib	skin:	n/a
31	chr10:61503989-61504039	NHBE	bronchial:	n/a
32	chr10:61503989-61504039	NHDF-neo	bronchial:	n/a
33	chr10:61503989-61504039	HCPEpiC	choroid plexus:	n/a
34	chr10:61503989-61504039	HepG2	liver:	n/a
35	chr10:61503989-61504039	AG04450	lung:	fetal
36	chr10:61503989-61504039	HEK293	kidney:	embryo
37	chr10:61503989-61504039	NT2-D1	testis:	n/a
38	chr10:61503989-61504039	GM12892	blood:	n/a
39	chr10:61503989-61504039	U87	brain:	n/a
40	chr10:61503989-61504039	T-47D	breast:	n/a
41	chr10:61503989-61504039	SKMC	muscle:	n/a
42	chr10:61503989-61504039	SK-N-SH	brain:	n/a
43	chr10:61503989-61504039	SK-N-MC	brain:	n/a
44	chr10:61503989-61504039	NB4	blood:	n/a
45	chr10:61503989-61504039	GM19239	blood:	n/a
46	chr10:61503989-61504039	HRE	kidney:	n/a
47	chr10:61503989-61504039	IMR90	lung:	fetal
48	chr10:61503989-61504039	NH-A	brain:	n/a
49	chr10:61503989-61504039	LNCaP	prostate:	n/a
50	chr10:61503989-61504039	HCM	heart:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC16A9-1	chr10:61503942-61504002	ENSG00000227877.2

No data

Variant related genes	Relation type
LINC00948	CpG island

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10821582	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821583	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993988	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993992	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913511	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948238	0.84[EUR][1000 genomes]
rs4948240	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948359	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55981851	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56371708	0.95[EUR][1000 genomes]
rs61861085	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61861087	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861088	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61863109	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61863111	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067658	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72815864	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72815872	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61495200-61507400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:61496000-61507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:61498200-61506200	Weak transcription	Stomach Mucosa	stomach
4	chr10:61498600-61507000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:61501800-61507400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:61503400-61504200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

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