Variant report

Variant	rs61861087
Chromosome Location	chr10:61511582-61511583
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10821582	0.89[ASN][1000 genomes]
rs10821583	0.95[ASN][1000 genomes]
rs10993988	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993989	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993992	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913511	0.95[ASN][1000 genomes]
rs4948240	0.95[ASN][1000 genomes]
rs4948359	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55981851	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56371708	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61861084	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861085	0.87[EUR][1000 genomes]
rs61861088	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61863109	0.95[ASN][1000 genomes]
rs61863111	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067658	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72815864	0.95[ASN][1000 genomes]
rs72815872	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61510200-61513200	Active TSS	Fetal Muscle Leg	muscle
2	chr10:61510400-61513200	Active TSS	HSMMtube	muscle
3	chr10:61510600-61513200	Active TSS	Fetal Muscle Trunk	muscle
4	chr10:61510800-61512200	Weak transcription	Ovary	ovary
5	chr10:61510800-61513200	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr10:61511000-61513200	Active TSS	Psoas Muscle	Psoas
7	chr10:61511000-61513400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr10:61511200-61513400	Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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