Variant report

Variant	rs10993992
Chromosome Location	chr10:61509122-61509123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10821582	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821583	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993989	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994037	1.00[YRI][hapmap]
rs10994043	1.00[YRI][hapmap]
rs10994065	1.00[YRI][hapmap]
rs1913511	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948238	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs4948240	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948359	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55981851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56371708	0.97[EUR][1000 genomes]
rs61861084	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861085	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61861087	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861088	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61863109	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61863111	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067658	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72815864	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72815872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61505400-61511000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:61507200-61510600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr10:61507400-61510200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:61508200-61511000	Enhancers	Psoas Muscle	Psoas
5	chr10:61508400-61509200	Enhancers	Fetal Intestine Large	intestine
6	chr10:61508400-61509400	Enhancers	Stomach Mucosa	stomach
7	chr10:61508800-61509200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:61509000-61509400	Enhancers	Fetal Muscle Leg	muscle
9	chr10:61509000-61509600	Enhancers	Skeletal Muscle Female	skeletal muscle

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