Variant report

Variant	rs1127327
Chromosome Location	chr10:61549215-61549216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10994001	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12250019	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12250305	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12256258	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12569631	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12571632	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12573796	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17199652	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17199988	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17789329	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17790289	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2175913	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2271564	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2393567	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4597020	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948367	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56232063	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56247613	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72815892	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72815897	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72817909	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72817910	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72817915	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73269619	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948030	chr10:61548576-61550162	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
3	chr10:61540200-61549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:61540200-61550400	Weak transcription	NH-A	brain
6	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
8	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
10	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
12	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:61540800-61551600	Weak transcription	HSMM	muscle
14	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
16	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
17	chr10:61542200-61549600	Weak transcription	Brain Substantia Nigra	brain
18	chr10:61544200-61551400	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:61544400-61549600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:61544400-61550400	Weak transcription	Primary T cells from cord blood	blood
21	chr10:61544600-61550400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:61544800-61550200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:61545000-61552400	Weak transcription	Colonic Mucosa	Colon
24	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:61545600-61549600	Weak transcription	Primary B cells from cord blood	blood
26	chr10:61545600-61551800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
28	chr10:61546200-61549600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:61546200-61549600	Weak transcription	Fetal Intestine Large	intestine
30	chr10:61546200-61550000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:61546200-61551400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:61546200-61551400	Weak transcription	A549	lung
33	chr10:61546200-61552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:61546200-61553800	Weak transcription	Stomach Mucosa	stomach
35	chr10:61546400-61550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:61546600-61552400	Weak transcription	Pancreas	Pancrea
37	chr10:61546800-61550000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:61546800-61550200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:61546800-61550400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:61546800-61550400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:61546800-61550400	Weak transcription	Fetal Thymus	thymus
42	chr10:61546800-61551000	Weak transcription	HMEC	breast
43	chr10:61546800-61552000	Weak transcription	Fetal Brain Female	brain
44	chr10:61546800-61552200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:61547000-61550200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr10:61547000-61552000	Weak transcription	HUVEC	blood vessel
47	chr10:61547200-61549800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:61547200-61550400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:61547200-61551800	Weak transcription	Left Ventricle	heart
50	chr10:61547200-61552400	Weak transcription	Aorta	Aorta

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