Variant report

Variant	rs1684914
Chromosome Location	chr10:61657741-61657742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61645422..61647388-chr10:61657593..61660192,2	K562	blood:
2	chr10:61643704..61646293-chr10:61656724..61658823,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10994042	0.85[JPT][hapmap]
rs10994069	0.90[ASN][1000 genomes]
rs10994075	0.88[ASN][1000 genomes]
rs10994076	0.88[ASN][1000 genomes]
rs1171811	0.90[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1171822	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1171823	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1171827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1171833	0.85[JPT][hapmap]
rs1180659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11813228	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11819444	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1184955	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12243713	0.90[ASN][1000 genomes]
rs12254991	0.90[ASN][1000 genomes]
rs12256615	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12266575	0.91[GIH][hapmap]
rs12268832	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1664257	0.85[JPT][hapmap]
rs1664258	0.85[JPT][hapmap]
rs1664260	0.85[JPT][hapmap]
rs1664262	0.85[JPT][hapmap]
rs1684889	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1684898	0.85[JPT][hapmap]
rs1684900	0.85[JPT][hapmap]
rs1684902	0.85[JPT][hapmap]
rs2440906	0.84[JPT][hapmap]
rs2440910	0.85[JPT][hapmap]
rs2440918	0.85[JPT][hapmap]
rs2450468	0.85[JPT][hapmap]
rs6479671	0.88[ASN][1000 genomes]
rs7070679	0.84[ASN][1000 genomes]
rs7085413	0.88[ASN][1000 genomes]
rs895243	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61643000-61659400	Weak transcription	Hela-S3	cervix
3	chr10:61645800-61659400	Weak transcription	Fetal Brain Male	brain
4	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
5	chr10:61650000-61659600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:61650000-61659800	Weak transcription	Thymus	Thymus
7	chr10:61650200-61658000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:61650200-61659400	Weak transcription	Fetal Thymus	thymus
9	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:61650400-61659600	Weak transcription	Dnd41	blood
12	chr10:61651200-61662000	Enhancers	Stomach Mucosa	stomach
13	chr10:61651200-61663400	Enhancers	Colon Smooth Muscle	Colon
14	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:61651600-61657800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:61651800-61662000	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:61652000-61659200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:61653200-61658000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:61653200-61658200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:61653200-61658200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:61653400-61660000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:61653400-61660600	Enhancers	Fetal Intestine Small	intestine
23	chr10:61653400-61661800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:61653400-61663800	Enhancers	Fetal Intestine Large	intestine
25	chr10:61653600-61659400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:61653800-61659800	Enhancers	Fetal Heart	heart
27	chr10:61653800-61661800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:61654200-61658600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:61654200-61659000	Weak transcription	GM12878-XiMat	blood
30	chr10:61654200-61659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:61654200-61659600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:61654200-61663200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:61654400-61658800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:61654400-61659200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:61654400-61659400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:61654400-61661400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:61654400-61663400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:61654800-61658200	Weak transcription	Fetal Brain Female	brain
39	chr10:61654800-61659200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:61654800-61659200	Weak transcription	Aorta	Aorta
41	chr10:61654800-61659800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:61654800-61663400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:61654800-61663800	Weak transcription	HSMM	muscle
44	chr10:61654800-61664000	Weak transcription	NHLF	lung
45	chr10:61655400-61659600	Weak transcription	Adipose Nuclei	Adipose
46	chr10:61655600-61659000	Weak transcription	Primary T cells from cord blood	blood
47	chr10:61655600-61663800	Weak transcription	Osteobl	bone
48	chr10:61655800-61657800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:61655800-61658200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:61655800-61658200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links