Variant report

Variant	rs1171822
Chromosome Location	chr10:61659272-61659273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61645422..61647388-chr10:61657593..61660192,2	K562	blood:
2	chr10:61654182..61656949-chr10:61658544..61661969,6	MCF-7	breast:
3	chr10:61655581..61657205-chr10:61658249..61660092,2	K562	blood:
4	chr10:61646248..61649681-chr10:61659057..61661794,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10994042	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs10994069	0.90[ASN][1000 genomes]
rs10994075	0.88[ASN][1000 genomes]
rs10994076	0.88[ASN][1000 genomes]
rs1171811	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1171823	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1171827	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1180659	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11813228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11819444	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1184955	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12243713	0.90[ASN][1000 genomes]
rs12254991	0.90[ASN][1000 genomes]
rs12256615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12268832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12763974	0.89[CHB][hapmap]
rs1684889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1684914	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6479671	0.88[ASN][1000 genomes]
rs7070679	0.84[ASN][1000 genomes]
rs7085413	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61643000-61659400	Weak transcription	Hela-S3	cervix
3	chr10:61645800-61659400	Weak transcription	Fetal Brain Male	brain
4	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
5	chr10:61650000-61659600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:61650000-61659800	Weak transcription	Thymus	Thymus
7	chr10:61650200-61659400	Weak transcription	Fetal Thymus	thymus
8	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:61650400-61659600	Weak transcription	Dnd41	blood
11	chr10:61651200-61662000	Enhancers	Stomach Mucosa	stomach
12	chr10:61651200-61663400	Enhancers	Colon Smooth Muscle	Colon
13	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:61651800-61662000	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:61653400-61660000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:61653400-61660600	Enhancers	Fetal Intestine Small	intestine
17	chr10:61653400-61661800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr10:61653400-61663800	Enhancers	Fetal Intestine Large	intestine
19	chr10:61653600-61659400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:61653800-61659800	Enhancers	Fetal Heart	heart
21	chr10:61653800-61661800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:61654200-61659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:61654200-61659600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:61654200-61663200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:61654400-61659400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:61654400-61661400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:61654400-61663400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:61654800-61659800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:61654800-61663400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:61654800-61663800	Weak transcription	HSMM	muscle
31	chr10:61654800-61664000	Weak transcription	NHLF	lung
32	chr10:61655400-61659600	Weak transcription	Adipose Nuclei	Adipose
33	chr10:61655600-61663800	Weak transcription	Osteobl	bone
34	chr10:61655800-61659600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:61656000-61663800	Weak transcription	NH-A	brain
36	chr10:61656200-61659400	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:61656200-61659400	Weak transcription	HMEC	breast
38	chr10:61656200-61659800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:61656200-61659800	Weak transcription	Fetal Stomach	stomach
40	chr10:61656200-61660000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr10:61656200-61661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:61656200-61661400	Weak transcription	Colonic Mucosa	Colon
43	chr10:61656200-61661600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:61656200-61663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:61656200-61664000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:61656200-61664200	Weak transcription	Right Ventricle	heart
47	chr10:61656400-61661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:61656400-61662800	Weak transcription	Brain Substantia Nigra	brain
49	chr10:61656400-61663200	Weak transcription	Brain Angular Gyrus	brain
50	chr10:61656600-61659400	Weak transcription	NHEK	skin

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