Variant report

Variant	rs12254991
Chromosome Location	chr10:61685761-61685762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10994069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10994075	0.98[ASN][1000 genomes]
rs10994076	0.98[ASN][1000 genomes]
rs1171811	0.90[ASN][1000 genomes]
rs1171822	0.90[ASN][1000 genomes]
rs1171823	0.90[ASN][1000 genomes]
rs1171827	0.90[ASN][1000 genomes]
rs1180659	0.90[ASN][1000 genomes]
rs11813228	0.98[ASN][1000 genomes]
rs1184955	0.90[ASN][1000 genomes]
rs12243713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12256615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12268832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1684889	0.90[ASN][1000 genomes]
rs1684914	0.90[ASN][1000 genomes]
rs6479671	0.98[ASN][1000 genomes]
rs7070679	0.93[ASN][1000 genomes]
rs7085413	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61685600-61686000	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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