Variant report
| Variant | rs10994069 |
|---|---|
| Chromosome Location | chr10:61673221-61673222 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000108091 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10994075 | 0.98[ASN][1000 genomes] |
| rs10994076 | 0.98[ASN][1000 genomes] |
| rs1171811 | 0.90[ASN][1000 genomes] |
| rs1171822 | 0.90[ASN][1000 genomes] |
| rs1171823 | 0.90[ASN][1000 genomes] |
| rs1171827 | 0.90[ASN][1000 genomes] |
| rs1180659 | 0.90[ASN][1000 genomes] |
| rs11813228 | 0.98[ASN][1000 genomes] |
| rs1184955 | 0.90[ASN][1000 genomes] |
| rs12243713 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12254991 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12256615 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12268832 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1684889 | 0.90[ASN][1000 genomes] |
| rs1684914 | 0.90[ASN][1000 genomes] |
| rs6479671 | 0.98[ASN][1000 genomes] |
| rs7070679 | 0.93[ASN][1000 genomes] |
| rs7085413 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1800316 | chr10:61639599-61700473 | Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61669000-61673800 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
