Variant report

Variant	rs7085413
Chromosome Location	chr10:61697720-61697721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61697187..61699091-chr10:61700833..61702353,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10400018	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10509120	1.00[CEU][hapmap]
rs10994042	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs10994069	0.98[ASN][1000 genomes]
rs10994075	1.00[ASN][1000 genomes]
rs10994076	1.00[ASN][1000 genomes]
rs10994165	1.00[CEU][hapmap]
rs10994167	1.00[CEU][hapmap]
rs10994169	1.00[CEU][hapmap]
rs1171811	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1171822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1171823	0.88[ASN][1000 genomes]
rs1171827	0.88[ASN][1000 genomes]
rs1171844	1.00[EUR][1000 genomes]
rs1180659	0.88[ASN][1000 genomes]
rs11813228	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11819444	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1184955	0.88[ASN][1000 genomes]
rs12243713	0.98[ASN][1000 genomes]
rs12250558	1.00[CEU][hapmap]
rs12254991	0.98[ASN][1000 genomes]
rs12256615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12259133	1.00[CEU][hapmap]
rs12266575	0.83[GIH][hapmap]
rs12268832	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12413122	1.00[CEU][hapmap]
rs12763974	0.89[CHB][hapmap]
rs12784462	0.80[ASN][1000 genomes]
rs1684889	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1684914	0.90[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16914288	1.00[TSI][hapmap]
rs3099372	1.00[EUR][1000 genomes]
rs6479671	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479674	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7070679	0.95[ASN][1000 genomes]
rs7083694	0.82[EUR][1000 genomes]
rs7907227	1.00[EUR][1000 genomes]
rs7917618	1.00[TSI][hapmap]
rs7923833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61696600-61698200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:61696600-61698200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:61696800-61698000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:61697600-61698000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:61697600-61698200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr10:61697600-61698200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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