Variant report

Variant	rs1171844
Chromosome Location	chr10:61699736-61699737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10400018	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10509120	1.00[CEU][hapmap]
rs10994165	1.00[CEU][hapmap]
rs10994167	1.00[CEU][hapmap]
rs10994169	1.00[CEU][hapmap]
rs12250558	1.00[CEU][hapmap]
rs12259133	1.00[CEU][hapmap]
rs12413122	1.00[CEU][hapmap]
rs3099372	1.00[EUR][1000 genomes]
rs6479671	1.00[EUR][1000 genomes]
rs6479674	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7083694	0.82[EUR][1000 genomes]
rs7085413	1.00[EUR][1000 genomes]
rs7907227	1.00[EUR][1000 genomes]
rs7923833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61699400-61699800	Enhancers	Fetal Intestine Small	intestine
2	chr10:61699600-61700000	Flanking Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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