Variant report

Variant	rs3099372
Chromosome Location	chr10:61696746-61696747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10400018	1.00[EUR][1000 genomes]
rs1171844	1.00[EUR][1000 genomes]
rs6479671	1.00[EUR][1000 genomes]
rs6479674	1.00[EUR][1000 genomes]
rs7083694	0.82[EUR][1000 genomes]
rs7085413	1.00[EUR][1000 genomes]
rs7907227	1.00[EUR][1000 genomes]
rs7923833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61696600-61696800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr10:61696600-61698200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:61696600-61698200	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links