Variant report

Variant	rs12266575
Chromosome Location	chr10:61571439-61571440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10994042	0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes]
rs10994043	1.00[AMR][1000 genomes]
rs11813228	0.85[CHB][hapmap]
rs11819444	0.86[JPT][hapmap]
rs12256615	0.82[CHB][hapmap]
rs12268832	0.91[GIH][hapmap]
rs12413093	0.84[ASN][1000 genomes]
rs1684889	0.91[GIH][hapmap]
rs1684914	0.91[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975776	chr10:61569234-61574091	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61548600-61573000	Strong transcription	Dnd41	blood
3	chr10:61549600-61572000	Strong transcription	Liver	Liver
4	chr10:61549600-61579600	Strong transcription	Primary B cells from cord blood	blood
5	chr10:61556000-61583800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr10:61556200-61573800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:61556200-61573800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:61556200-61574800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:61556200-61574800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:61556600-61573000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:61556800-61574600	Strong transcription	Primary T cells from cord blood	blood
12	chr10:61557400-61573400	Strong transcription	Adipose Nuclei	Adipose
13	chr10:61557400-61574600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:61561000-61572800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:61561000-61574000	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:61561000-61574600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:61561200-61571800	Strong transcription	HSMM	muscle
18	chr10:61561200-61574000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:61561200-61574600	Strong transcription	HepG2	liver
20	chr10:61561600-61572600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:61561600-61572800	Strong transcription	Osteobl	bone
22	chr10:61561600-61573600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:61561800-61571600	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:61562000-61573400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:61562200-61574600	Strong transcription	Fetal Thymus	thymus
26	chr10:61562400-61572600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:61562600-61571600	Strong transcription	GM12878-XiMat	blood
28	chr10:61562600-61573000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:61562600-61573400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:61562800-61571600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:61562800-61571600	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr10:61562800-61571600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:61562800-61571600	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:61562800-61571600	Strong transcription	Thymus	Thymus
35	chr10:61562800-61572400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:61562800-61572600	Strong transcription	Fetal Intestine Large	intestine
37	chr10:61562800-61572600	Strong transcription	HMEC	breast
38	chr10:61562800-61572800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:61562800-61574200	Strong transcription	Placenta	Placenta
40	chr10:61562800-61574400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:61563000-61572800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr10:61563200-61571600	Strong transcription	Fetal Muscle Leg	muscle
43	chr10:61563600-61577600	Weak transcription	Right Atrium	heart
44	chr10:61564200-61576800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr10:61565000-61572800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:61565000-61573600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr10:61565400-61586600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr10:61565600-61572000	Strong transcription	A549	lung
49	chr10:61566000-61572800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links