Variant report

Variant	rs12763974
Chromosome Location	chr10:61808880-61808881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61808127..61809932-chr10:61821769..61823732,2	K562	blood:
2	chr10:61667520..61669749-chr10:61807482..61809424,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1171811	0.89[CHB][hapmap]
rs1171822	0.89[CHB][hapmap]
rs11813228	1.00[CHB][hapmap]
rs12268832	0.89[CHB][hapmap]
rs1684889	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551176	chr10:61802342-61814052	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61786400-61815000	Weak transcription	Left Ventricle	heart
2	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
4	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
5	chr10:61791200-61814200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:61791600-61828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:61791800-61815400	Weak transcription	Fetal Intestine Large	intestine
8	chr10:61791800-61829400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
10	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
11	chr10:61792600-61815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:61793200-61819000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr10:61796000-61834800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:61797200-61819000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:61797200-61828200	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:61797600-61827600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:61800000-61819000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:61800800-61819000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:61801400-61815600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:61801400-61818400	Weak transcription	K562	blood
22	chr10:61801600-61809600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:61801600-61813200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:61801800-61832600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:61802400-61817400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:61802600-61813200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:61802800-61828400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:61803000-61827800	Weak transcription	Fetal Kidney	kidney
29	chr10:61803600-61815000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:61803600-61818800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:61803600-61835000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:61803800-61834200	Weak transcription	Brain Angular Gyrus	brain
33	chr10:61803800-61835000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:61804000-61812600	Weak transcription	Placenta	Placenta
35	chr10:61804000-61819000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:61804000-61829800	Weak transcription	Fetal Stomach	stomach
37	chr10:61804000-61835000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:61804200-61814200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:61804400-61814400	Weak transcription	HSMMtube	muscle
40	chr10:61804400-61814800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:61804400-61815000	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:61804400-61819000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:61805000-61835400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr10:61805400-61834200	Weak transcription	Brain Anterior Caudate	brain
45	chr10:61805600-61827800	Weak transcription	Right Ventricle	heart
46	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
47	chr10:61806000-61815000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:61806000-61818600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:61806000-61847800	Weak transcription	Fetal Lung	lung
50	chr10:61806200-61835000	Weak transcription	Rectal Mucosa Donor 31	rectum

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