Variant report

Variant	rs1171811
Chromosome Location	chr10:61652529-61652530
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61649784..61652594-chr10:61664669..61667678,3	MCF-7	breast:
2	chr10:61652458..61655140-chr10:61737942..61740337,2	K562	blood:
3	chr10:61647386..61652939-chr10:61663740..61669349,9	K562	blood:
4	chr10:61648268..61650504-chr10:61650711..61652681,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10994042	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs10994069	0.90[ASN][1000 genomes]
rs10994075	0.88[ASN][1000 genomes]
rs10994076	0.88[ASN][1000 genomes]
rs1171822	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1171823	1.00[ASN][1000 genomes]
rs1171827	1.00[ASN][1000 genomes]
rs1180659	1.00[ASN][1000 genomes]
rs11813228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11819444	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1184955	1.00[ASN][1000 genomes]
rs12243713	0.90[ASN][1000 genomes]
rs12252107	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs12254991	0.90[ASN][1000 genomes]
rs12256615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12261686	0.85[TSI][hapmap]
rs12268832	1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12763974	0.89[CHB][hapmap]
rs1684889	1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1684914	0.90[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6479671	0.88[ASN][1000 genomes]
rs7070679	0.84[ASN][1000 genomes]
rs7072298	1.00[CEU][hapmap]
rs7085413	0.88[ASN][1000 genomes]
rs7089573	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61637600-61653600	Weak transcription	NHDF-Ad	bronchial
3	chr10:61637800-61653600	Weak transcription	NH-A	brain
4	chr10:61638400-61653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:61638400-61653600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:61638400-61653600	Weak transcription	Osteobl	bone
7	chr10:61638600-61653200	Weak transcription	HSMMtube	muscle
8	chr10:61641200-61653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:61641600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:61641600-61664200	Weak transcription	A549	lung
11	chr10:61641800-61655400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:61643000-61659400	Weak transcription	Hela-S3	cervix
13	chr10:61644600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:61645800-61659400	Weak transcription	Fetal Brain Male	brain
15	chr10:61647000-61655000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:61647200-61653600	Weak transcription	Right Ventricle	heart
17	chr10:61647200-61655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:61648000-61653600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:61648200-61655200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:61648400-61654000	Weak transcription	Psoas Muscle	Psoas
21	chr10:61648600-61657600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:61649000-61653200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:61649000-61653600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:61649000-61654000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:61649200-61652600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:61649200-61653800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr10:61649200-61654000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:61649800-61653200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
30	chr10:61650000-61653000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:61650000-61653600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:61650000-61653600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:61650000-61653600	Weak transcription	Fetal Lung	lung
34	chr10:61650000-61659600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:61650000-61659800	Weak transcription	Thymus	Thymus
36	chr10:61650200-61653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:61650200-61653600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:61650200-61653600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:61650200-61653600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:61650200-61653600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:61650200-61653600	Weak transcription	NHLF	lung
42	chr10:61650200-61654000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:61650200-61658000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:61650200-61659400	Weak transcription	Fetal Thymus	thymus
45	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:61650400-61653600	Weak transcription	Fetal Brain Female	brain
48	chr10:61650400-61653600	Weak transcription	Fetal Stomach	stomach
49	chr10:61650400-61659600	Weak transcription	Dnd41	blood
50	chr10:61650800-61656200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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