Variant report

Variant	rs12261686
Chromosome Location	chr10:61588639-61588640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61582052..61584614-chr10:61587105..61589792,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10128140	0.90[AFR][1000 genomes]
rs10994034	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10994035	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1171811	0.85[TSI][hapmap]
rs12252107	1.00[ASW][hapmap];0.82[LWK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs12259634	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12262905	1.00[MEX][hapmap]
rs16914105	1.00[MEX][hapmap]
rs6479663	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs7097764	1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs7098890	0.83[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61567000-61593600	Weak transcription	Small Intestine	intestine
2	chr10:61571000-61591200	Weak transcription	NHEK	skin
3	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
4	chr10:61571600-61595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:61571600-61598400	Weak transcription	Fetal Brain Female	brain
6	chr10:61571600-61609200	Weak transcription	NHLF	lung
7	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
8	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
9	chr10:61572400-61589200	Weak transcription	K562	blood
10	chr10:61572400-61591200	Weak transcription	Hela-S3	cervix
11	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:61572800-61591200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:61572800-61591200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:61573000-61598400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:61574200-61589000	Weak transcription	Liver	Liver
16	chr10:61574200-61589200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:61574600-61589000	Weak transcription	HMEC	breast
18	chr10:61574600-61589200	Weak transcription	Fetal Thymus	thymus
19	chr10:61574800-61589400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:61576600-61594400	Weak transcription	Fetal Heart	heart
21	chr10:61578000-61590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:61578000-61590600	Weak transcription	NH-A	brain
23	chr10:61578000-61590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:61578000-61591400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:61578200-61589600	Weak transcription	Brain Angular Gyrus	brain
27	chr10:61578200-61590400	Weak transcription	Osteobl	bone
28	chr10:61578200-61590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:61578200-61591200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:61578200-61591400	Weak transcription	Esophagus	oesophagus
31	chr10:61578200-61595400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:61578200-61597800	Weak transcription	HSMMtube	muscle
33	chr10:61578400-61591200	Weak transcription	HSMM	muscle
34	chr10:61578400-61603400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:61578600-61589200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:61578800-61589400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:61579600-61591000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:61579600-61591800	Weak transcription	HUVEC	blood vessel
39	chr10:61579800-61595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:61580000-61590600	Weak transcription	Brain Germinal Matrix	brain
41	chr10:61580000-61595200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:61580200-61591200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:61580200-61603200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:61580200-61605600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:61580400-61591000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
49	chr10:61581000-61589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:61581000-61598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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