Variant report

Variant	rs1171827
Chromosome Location	chr10:61664247-61664248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61643762..61645786-chr10:61664123..61666003,2	MCF-7	breast:
2	chr10:61615112..61617171-chr10:61663279..61664781,2	MCF-7	breast:
3	chr10:61661963..61664576-chr10:61749051..61751954,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10994069	0.90[ASN][1000 genomes]
rs10994075	0.88[ASN][1000 genomes]
rs10994076	0.88[ASN][1000 genomes]
rs1171811	1.00[ASN][1000 genomes]
rs1171822	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1171823	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1180659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11813228	0.88[ASN][1000 genomes]
rs1184955	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12243713	0.90[ASN][1000 genomes]
rs12254991	0.90[ASN][1000 genomes]
rs12256615	0.90[ASN][1000 genomes]
rs12268832	0.95[ASN][1000 genomes]
rs1684889	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1684914	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6479671	0.88[ASN][1000 genomes]
rs7070679	0.84[ASN][1000 genomes]
rs7085413	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61659400-61664600	Weak transcription	HSMMtube	muscle
2	chr10:61660600-61664600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:61660800-61664400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:61661200-61665000	Enhancers	Small Intestine	intestine
5	chr10:61662400-61664400	Weak transcription	Ovary	ovary
6	chr10:61663000-61664400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:61663000-61664400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:61663000-61664400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:61663000-61664400	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr10:61663000-61664800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:61663200-61664400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:61663200-61664400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:61663400-61664800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:61663400-61664800	Transcr. at gene 5' and 3'	K562	blood
15	chr10:61663400-61665000	Flanking Active TSS	GM12878-XiMat	blood
16	chr10:61663400-61665200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:61663400-61665200	Flanking Active TSS	NHEK	skin
18	chr10:61663400-61665800	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr10:61663400-61665800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr10:61663400-61668400	Active TSS	Aorta	Aorta
21	chr10:61663600-61664400	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr10:61663600-61664600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr10:61663600-61664600	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr10:61663600-61664600	Active TSS	Rectal Smooth Muscle	rectum
25	chr10:61663600-61664600	Enhancers	Stomach Mucosa	stomach
26	chr10:61663600-61664800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr10:61663600-61664800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr10:61663600-61665000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr10:61663600-61665200	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr10:61663600-61665200	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr10:61663600-61665400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:61663800-61664400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
33	chr10:61663800-61664400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr10:61663800-61664400	Enhancers	Primary T cells from cord blood	blood
35	chr10:61663800-61664400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:61663800-61664400	Flanking Active TSS	Fetal Intestine Small	intestine
37	chr10:61663800-61664400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr10:61663800-61664400	Enhancers	Psoas Muscle	Psoas
39	chr10:61663800-61664400	Enhancers	HSMM	muscle
40	chr10:61663800-61664600	Enhancers	Primary B cells from peripheral blood	blood
41	chr10:61663800-61664800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:61663800-61664800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr10:61663800-61664800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:61663800-61664800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:61663800-61664800	Flanking Active TSS	NHDF-Ad	bronchial
46	chr10:61663800-61665000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:61663800-61665200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:61663800-61665200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:61663800-61665200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:61663800-61665200	Flanking Active TSS	Brain Angular Gyrus	brain

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