Variant report

Variant	rs1225105
Chromosome Location	chr2:190609186-190609187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11883813	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11888192	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225083	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225097	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225100	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225111	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225121	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693550	0.80[YRI][hapmap]
rs1470100	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1898559	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2196670	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254040	0.82[YRI][hapmap]
rs2352288	0.80[YRI][hapmap]
rs4667301	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742934	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742949	0.83[YRI][hapmap]
rs6434362	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs6708086	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6736443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs930426	0.80[YRI][hapmap]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190540800-190611800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:190540800-190618400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:190541600-190617000	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:190550800-190617000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:190550800-190626800	Weak transcription	Right Ventricle	heart
6	chr2:190551200-190617000	Weak transcription	HSMM	muscle
7	chr2:190557400-190617000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:190563600-190611800	Weak transcription	Brain Substantia Nigra	brain
9	chr2:190563600-190612600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:190568200-190611600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:190571600-190612400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:190573000-190611000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:190575000-190615800	Weak transcription	Fetal Kidney	kidney
14	chr2:190576800-190627000	Weak transcription	Pancreas	Pancrea
15	chr2:190577000-190611600	Weak transcription	Ovary	ovary
16	chr2:190577000-190622600	Weak transcription	Aorta	Aorta
17	chr2:190577200-190611800	Weak transcription	Fetal Stomach	stomach
18	chr2:190580000-190611000	Weak transcription	Fetal Intestine Large	intestine
19	chr2:190580000-190611600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:190583000-190626800	Weak transcription	Psoas Muscle	Psoas
21	chr2:190589400-190626600	Weak transcription	HUVEC	blood vessel
22	chr2:190589600-190611600	Weak transcription	Fetal Intestine Small	intestine
23	chr2:190590400-190610000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:190590800-190614800	Weak transcription	Esophagus	oesophagus
25	chr2:190591000-190612800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:190591200-190611200	Weak transcription	Fetal Thymus	thymus
27	chr2:190591800-190611800	Weak transcription	Fetal Muscle Leg	muscle
28	chr2:190593600-190609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:190593600-190611800	Weak transcription	Left Ventricle	heart
30	chr2:190594800-190627000	Weak transcription	Gastric	stomach
31	chr2:190595200-190610000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr2:190596200-190612000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:190597800-190626600	Weak transcription	Fetal Heart	heart
34	chr2:190599000-190626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr2:190600800-190616600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:190601400-190626800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:190602400-190611600	Weak transcription	Osteobl	bone
38	chr2:190602400-190617000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:190602400-190626400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr2:190603200-190610200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr2:190603200-190612000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr2:190603600-190609800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:190603800-190626800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr2:190604400-190611800	Weak transcription	Thymus	Thymus
45	chr2:190605000-190626800	Weak transcription	Fetal Brain Male	brain
46	chr2:190605400-190611800	Weak transcription	GM12878-XiMat	blood
47	chr2:190606400-190611600	Weak transcription	Fetal Brain Female	brain
48	chr2:190606400-190612600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr2:190606600-190609400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr2:190606600-190613200	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links