Variant report

Variant	rs2196670
Chromosome Location	chr2:190616961-190616962
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190615478..190616969-chr2:190934827..190935711,5	MCF-7	breast:
2	chr2:190615675..190618614-chr2:190648414..190651811,3	K562	blood:
3	chr2:190615507..190617110-chr2:190708783..190711521,2	K562	blood:
4	chr2:190616017..190617626-chr2:190626039..190628223,3	MCF-7	breast:
5	chr2:190615675..190617480-chr2:190649210..190651811,2	K562	blood:

Variant related genes	Relation type
ENSG00000064933	Chromatin interaction
ENSG00000128694	Chromatin interaction
ENSG00000253559	Chromatin interaction
ENSG00000128699	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11883813	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11888192	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225083	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225097	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225100	0.82[ASW][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225105	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225111	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225121	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693550	0.80[YRI][hapmap]
rs1470100	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1898559	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254040	0.80[YRI][hapmap]
rs2352288	0.80[YRI][hapmap]
rs4667301	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742934	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742949	0.83[YRI][hapmap]
rs6434362	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs6708086	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6736443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs930426	0.80[YRI][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190540800-190618400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:190541600-190617000	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:190550800-190617000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:190550800-190626800	Weak transcription	Right Ventricle	heart
5	chr2:190551200-190617000	Weak transcription	HSMM	muscle
6	chr2:190557400-190617000	Weak transcription	Brain Angular Gyrus	brain
7	chr2:190576800-190627000	Weak transcription	Pancreas	Pancrea
8	chr2:190577000-190622600	Weak transcription	Aorta	Aorta
9	chr2:190583000-190626800	Weak transcription	Psoas Muscle	Psoas
10	chr2:190589400-190626600	Weak transcription	HUVEC	blood vessel
11	chr2:190594800-190627000	Weak transcription	Gastric	stomach
12	chr2:190597800-190626600	Weak transcription	Fetal Heart	heart
13	chr2:190599000-190626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr2:190601400-190626800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:190602400-190617000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:190602400-190626400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:190603800-190626800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:190605000-190626800	Weak transcription	Fetal Brain Male	brain
19	chr2:190607000-190619200	Weak transcription	NHDF-Ad	bronchial
20	chr2:190607000-190626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:190607000-190626800	Weak transcription	NH-A	brain
22	chr2:190607400-190626800	Weak transcription	HSMMtube	muscle
23	chr2:190607800-190621000	Strong transcription	Liver	Liver
24	chr2:190607800-190622400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:190608400-190620200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:190608600-190626200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr2:190609400-190617400	Weak transcription	Brain Anterior Caudate	brain
28	chr2:190609600-190626600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:190609600-190627000	Weak transcription	Small Intestine	intestine
30	chr2:190609800-190620400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:190609800-190626200	Weak transcription	HMEC	breast
32	chr2:190610000-190626800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr2:190610200-190627000	Weak transcription	Lung	lung
34	chr2:190610200-190627000	Weak transcription	Spleen	Spleen
35	chr2:190610400-190626200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:190610400-190626800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr2:190610400-190626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:190610400-190627000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:190610800-190617000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr2:190610800-190617800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:190610800-190620200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr2:190611200-190620200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr2:190611200-190620200	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr2:190611200-190625800	Weak transcription	NHEK	skin
45	chr2:190611400-190626600	Weak transcription	NHLF	lung
46	chr2:190611800-190620200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr2:190611800-190620200	Strong transcription	Fetal Muscle Leg	muscle
48	chr2:190611800-190626000	Weak transcription	HepG2	liver
49	chr2:190612000-190617000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr2:190613000-190617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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