Variant report

Variant	rs12252784
Chromosome Location	chr10:98146654-98146655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11188741	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11594430	0.83[EUR][1000 genomes]
rs11597420	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17111762	1.00[JPT][hapmap]
rs2093557	1.00[JPT][hapmap]
rs2181324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28438557	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2901993	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98135400-98149600	Weak transcription	Right Atrium	heart
2	chr10:98140000-98149200	Weak transcription	Gastric	stomach
3	chr10:98141400-98150200	Weak transcription	Spleen	Spleen
4	chr10:98142400-98148400	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:98144600-98146800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:98144600-98149600	Weak transcription	Esophagus	oesophagus
7	chr10:98145400-98156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:98146200-98147400	Enhancers	NH-A	brain
9	chr10:98146400-98146800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:98146600-98146800	Enhancers	Pancreas	Pancrea
11	chr10:98146600-98147000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:98146600-98147600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:98146600-98147800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:98146600-98148000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:98146600-98148000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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