Variant report

Variant	rs28438557
Chromosome Location	chr10:98138978-98138979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11188741	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11594430	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252784	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17111762	0.90[ASN][1000 genomes]
rs2093557	1.00[ASN][1000 genomes]
rs2901993	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56094817	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98135200-98139200	Enhancers	Rectal Smooth Muscle	rectum
2	chr10:98135200-98139400	Enhancers	Colon Smooth Muscle	Colon
3	chr10:98135200-98139600	Weak transcription	Colonic Mucosa	Colon
4	chr10:98135400-98139600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:98135400-98140800	Weak transcription	Hela-S3	cervix
6	chr10:98135400-98149600	Weak transcription	Right Atrium	heart
7	chr10:98135600-98139600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:98135600-98141000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:98136800-98139000	Enhancers	Placenta	Placenta
10	chr10:98137200-98139200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr10:98137200-98139200	Enhancers	Lung	lung
12	chr10:98138000-98139600	Weak transcription	Gastric	stomach
13	chr10:98138200-98145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:98138200-98146400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:98138600-98140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:98138800-98139000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:98138800-98139600	Weak transcription	Spleen	Spleen
18	chr10:98138800-98140800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:98138800-98141200	Weak transcription	Left Ventricle	heart
20	chr10:98138800-98144200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:98138800-98144200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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