Variant report

Variant	rs12252923
Chromosome Location	chr10:58963612-58963613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10160089	1.00[ASN][1000 genomes]
rs10160131	1.00[ASN][1000 genomes]
rs10160133	1.00[ASN][1000 genomes]
rs10219026	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219054	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005675	1.00[ASN][1000 genomes]
rs11005676	1.00[ASN][1000 genomes]
rs11005681	1.00[ASN][1000 genomes]
rs11005682	1.00[ASN][1000 genomes]
rs11005683	1.00[ASN][1000 genomes]
rs11005684	1.00[ASN][1000 genomes]
rs11005704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11498138	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11498142	1.00[ASN][1000 genomes]
rs12240620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242006	1.00[ASN][1000 genomes]
rs12244311	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244376	1.00[ASN][1000 genomes]
rs12244644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247244	1.00[ASN][1000 genomes]
rs12247322	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247842	1.00[ASN][1000 genomes]
rs12248383	1.00[ASN][1000 genomes]
rs12248825	1.00[EUR][1000 genomes]
rs12249336	1.00[ASN][1000 genomes]
rs12251432	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253024	1.00[ASN][1000 genomes]
rs12256078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256746	1.00[ASN][1000 genomes]
rs12257106	1.00[ASN][1000 genomes]
rs12257906	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257971	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259132	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261393	1.00[ASN][1000 genomes]
rs12262199	1.00[ASN][1000 genomes]
rs12264033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266329	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267990	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268048	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268283	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376802	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394111	1.00[ASN][1000 genomes]
rs1394112	1.00[ASN][1000 genomes]
rs1915692	1.00[ASN][1000 genomes]
rs1915693	1.00[ASN][1000 genomes]
rs1915694	1.00[ASN][1000 genomes]
rs1915695	1.00[ASN][1000 genomes]
rs28787347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3107508	1.00[ASN][1000 genomes]
rs3849970	1.00[ASN][1000 genomes]
rs3849971	1.00[ASN][1000 genomes]
rs60443679	1.00[ASN][1000 genomes]
rs7072641	1.00[ASN][1000 genomes]
rs7072950	1.00[ASN][1000 genomes]
rs7073369	1.00[ASN][1000 genomes]
rs7075069	1.00[ASN][1000 genomes]
rs7077008	1.00[ASN][1000 genomes]
rs7078639	1.00[ASN][1000 genomes]
rs7080282	1.00[ASN][1000 genomes]
rs7082149	1.00[ASN][1000 genomes]
rs7082260	1.00[ASN][1000 genomes]
rs7082897	1.00[ASN][1000 genomes]
rs7088435	1.00[ASN][1000 genomes]
rs7089692	1.00[ASN][1000 genomes]
rs7090557	1.00[ASN][1000 genomes]
rs7090594	1.00[ASN][1000 genomes]
rs7090980	1.00[ASN][1000 genomes]
rs7091186	1.00[ASN][1000 genomes]
rs7091214	1.00[ASN][1000 genomes]
rs7091293	1.00[ASN][1000 genomes]
rs7091651	1.00[ASN][1000 genomes]
rs7092438	1.00[ASN][1000 genomes]
rs7093642	1.00[ASN][1000 genomes]
rs7093904	1.00[ASN][1000 genomes]
rs7100491	1.00[ASN][1000 genomes]
rs73291746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901155	1.00[ASN][1000 genomes]
rs7913258	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918221	1.00[ASN][1000 genomes]
rs7921321	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2756345	chr10:58846594-59027194	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829927	chr10:58849853-58979792	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895526	chr10:58853784-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv895527	chr10:58853784-58979792	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv895528	chr10:58853784-58991581	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv470951	chr10:58905847-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv467287	chr10:58913651-58970006	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv551116	chr10:58913651-58970006	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3367662	chr10:58926008-58972421	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv551117	chr10:58938552-59007742	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv895543	chr10:58938552-59210800	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
13	nsv895544	chr10:58938552-59282980	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
14	nsv895545	chr10:58938552-59313872	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
15	nsv916857	chr10:58960110-59272160	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
16	nsv947643	chr10:58963412-58969474	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58952400-58968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:58960200-58966600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:58963600-58963800	Enhancers	HUES64 Cell Line	embryonic stem cell

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