Variant report

Variant	rs12254484
Chromosome Location	chr10:28325760-28325761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1041661	1.00[EUR][1000 genomes]
rs11006809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245590	1.00[EUR][1000 genomes]
rs12268698	1.00[EUR][1000 genomes]
rs1319351	1.00[EUR][1000 genomes]
rs1334720	1.00[EUR][1000 genomes]
rs2368265	1.00[EUR][1000 genomes]
rs2368267	1.00[EUR][1000 genomes]
rs2887206	1.00[EUR][1000 genomes]
rs3885633	1.00[EUR][1000 genomes]
rs59907257	1.00[EUR][1000 genomes]
rs60707254	1.00[EUR][1000 genomes]
rs7068102	1.00[EUR][1000 genomes]
rs7071072	1.00[EUR][1000 genomes]
rs7071379	1.00[EUR][1000 genomes]
rs7076362	1.00[EUR][1000 genomes]
rs73606037	1.00[EUR][1000 genomes]
rs73606043	1.00[EUR][1000 genomes]
rs73606050	1.00[EUR][1000 genomes]
rs73606051	1.00[EUR][1000 genomes]
rs74127187	0.88[AFR][1000 genomes]
rs9702897	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv947793	chr10:28318376-28326818	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28325200-28326200	Enhancers	NH-A	brain
2	chr10:28325400-28326200	Enhancers	Osteobl	bone
3	chr10:28325600-28326400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links