Variant report

Variant	rs12254756
Chromosome Location	chr10:26048764-26048765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10128321	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10508702	1.00[EUR][1000 genomes]
rs11014730	1.00[EUR][1000 genomes]
rs11014731	1.00[EUR][1000 genomes]
rs12245158	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12248899	1.00[EUR][1000 genomes]
rs12260558	1.00[EUR][1000 genomes]
rs73610350	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26042800-26051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:26043200-26057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:26047600-26054400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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