Variant report

Variant	rs12260558
Chromosome Location	chr10:26057161-26057162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10128321	1.00[EUR][1000 genomes]
rs10508702	1.00[EUR][1000 genomes]
rs11014730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014739	1.00[AMR][1000 genomes]
rs11014748	0.82[AFR][1000 genomes]
rs11014750	0.82[AFR][1000 genomes]
rs12245158	1.00[EUR][1000 genomes]
rs12248899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254756	1.00[EUR][1000 genomes]
rs73610350	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12260558	RASIP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26043200-26057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26056200-26057200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:26056200-26057400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:26056200-26057600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:26056200-26065600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:26056400-26057200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:26056600-26057200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:26056800-26057600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:26056800-26063800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:26056800-26064800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:26057000-26064000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links